| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1701 |
|---|
| Symbol | |
|---|
| ID | 5155021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 1772623 |
|---|
| End bp | 1774695 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640556658 |
|---|
| Product | putative pseudouridine synthase, Rsu |
|---|
| Protein accession | YP_001237816 |
|---|
| Protein GI | 148253231 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.305016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.35374 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTG ACACCGACAA AGACAACGAT TCCCGCGGCC GCCGCGGCGG CGCCCCGCGG
GGGCGGTCCG AAGGCGGCAA GGGACGCTCG GGCGCCGCAC GCGGGCCGGA GAAGAAGTTC
GCCAAGCGCG GCTTCGGTGA CAAGGACGCT GGCGCCAAGG GCAAGCGCTC GTTCGACGAC
GGCCGCGCCC CGCGCCGTCG CGACGACGGC GATGCGCCGC GCAAATCCTA TGGCGACAAG
CCGCGCTTCA ACCGCGATGA GCGTCCGCGC GGCGATCGGC CGTTTGCCGC CCGTCCGGCG
CGGGCTGCCG ATGGCGAGAA GCGCGCCTTC AAGCCGCGCG GCGACCGGCC GAAATTCGAC
CGTGACGAGC GCAGTGGCGA GAAGCGCCCC TATACGCCGC GCGCCAATCG CGACGAGGCC
CGCCCGGCGG GCCGCTCGTC CGAGCGCAAG TTCGGTGAGC GCAAGCCTTA CGCCGCGCGA
GAGCGTGACG GCGACAAGCG GCCCTATACG CCGCGCGGAG AGGGTGCGCG TGACCGCGGC
GATCGTCCGC GTGCAGACCG CAGCTTCGGG GACCGGCCGC CGCGGACCGG TGATCGCCCG
GAGCGCAAAT TTGGCGGAGA ACGCAAGTTC TCGCGCGGCG CTGAAGGGGA TCGCGGCGAG
CGCAAATTCG GAGCAGGACC GCGTGGGCCG CGCAAGGAGT TCGGGGATCG GCCGCAGCGC
GGCGAGACCA AGCCCTGGCA GAAGCGCGGC GCGGATGGCG ATCGTCCGGA GCGCAGCCCG
CGTGCCCCGC GTGAGGGCGG CCGGAGCTTC GACCGTCCTC GGTCCGATCG TCCGCGCGAG
GATCGTCCGA AGTTTGACAG ACCCAAATTC GACAAGCCCA AGTTCGATCG TCCGCGCCGT
CCGGAAGGGC GCACCGACTG GCAGGAGCAT CCGCGCAGCG AGCGCCGCGG TGGCGATTTC
GGCGATCGTC CGCGCCGCGA CAATGAGGAC GACAGCAGGG TCTTCGCCAA GCGTCCGGCC
TTTGGCGGCC GCGGTGCCTA TCGCGAGCGC AAGCCGGAGA CCGACAAGCG TGTGAAGCGC
GTCGTGCCCG ACGAGGCGCC GAAGCCCGGC AAGGCTGGCG ATCGGATCGC CAAGGTGCTG
GCCCGCGCCG GCCTGGCGTC GCGCCGCGAT GCCGAGGAAA TGGTGACGCA GGGCCGCGTC
ACCGTGAACG GCCGCGTCAT CAACTCGCCG GCGCTCGACG TCACCGAGAA CGACGTCATC
CAGGTGGACG GCGCCCCGCT GCCGCAGCGC GAGCGCACGC GGCTGTTTCT GTACCACAAG
CCGCGCGGCC TGATGACGAC GCACAGCGAC CCCGAGGGTC GCCCGACCGT GTTCGATAAT
CTGCCCGAAG GCCTGCCGCG GCTGATCTCG ATCGGCCGGC TCGACTTCAA CACCGAAGGC
CTGTTGCTGC TCACCAATGA TGGCGGCCTC GCCCGCGTGC TGGAGCTGCC GGACACCGGC
TGGACGCGAC GCTATCGCGT CCGCGCCCAT GGCGAGATCA CCCAGGCGCA GCTCGACCAG
CTCGCCGCGG GTGTCGAGGT CGATGGCGTG AAATACGGCC CGATCGAAGC CACGCTCGAG
CGCGACCAGG GCGCCAATGT CTGGCTCATC GTCGCGATCC GCGAAGGCAA GAACCGCGAG
GTGCGCAACG TGCTGGCGTA TCTCGGCCTC GAGGTGAACC GCCTGATCCG CGTCTCCTAT
GGTCCGTTCC AGCTGCTGGA GCTGCCCGAG GGCGAGGTGC AGGAGGTCAA GACGCGGGTG
CTGCGCGAGC AACTCGGCGA GAAGGTGATC GCGCAGTCCG GTGCGGATCT CGGTCCGGCG
GGCAAAGGCA ATCGCGAGCC GCTGCCGGAT CCCAAGCCCA AGCCGAAGCG CGAGGTCGTC
GCCGACCGCA AGGGCCGCCG CGTGCTGGTC CAGCGCACCG GCAGCGAGGA GGCGCGCGCG
CGCCACGAGG CCGAGGCGCG CTTTCCCGGT CCGCCGCGGC GGCCGAAGCG CGGCTATCAC
GGCAAGCGTG ATATCACGCC GCAGGACGAG TAG
|
|---|
| Protein sequence | MPRDTDKDND SRGRRGGAPR GRSEGGKGRS GAARGPEKKF AKRGFGDKDA GAKGKRSFDD
GRAPRRRDDG DAPRKSYGDK PRFNRDERPR GDRPFAARPA RAADGEKRAF KPRGDRPKFD
RDERSGEKRP YTPRANRDEA RPAGRSSERK FGERKPYAAR ERDGDKRPYT PRGEGARDRG
DRPRADRSFG DRPPRTGDRP ERKFGGERKF SRGAEGDRGE RKFGAGPRGP RKEFGDRPQR
GETKPWQKRG ADGDRPERSP RAPREGGRSF DRPRSDRPRE DRPKFDRPKF DKPKFDRPRR
PEGRTDWQEH PRSERRGGDF GDRPRRDNED DSRVFAKRPA FGGRGAYRER KPETDKRVKR
VVPDEAPKPG KAGDRIAKVL ARAGLASRRD AEEMVTQGRV TVNGRVINSP ALDVTENDVI
QVDGAPLPQR ERTRLFLYHK PRGLMTTHSD PEGRPTVFDN LPEGLPRLIS IGRLDFNTEG
LLLLTNDGGL ARVLELPDTG WTRRYRVRAH GEITQAQLDQ LAAGVEVDGV KYGPIEATLE
RDQGANVWLI VAIREGKNRE VRNVLAYLGL EVNRLIRVSY GPFQLLELPE GEVQEVKTRV
LREQLGEKVI AQSGADLGPA GKGNREPLPD PKPKPKREVV ADRKGRRVLV QRTGSEEARA
RHEAEARFPG PPRRPKRGYH GKRDITPQDE
|
|---|
| |