Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_1552 |
Symbol | |
ID | 5152832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 1635415 |
End bp | 1637211 |
Gene Length | 1797 bp |
Protein Length | 598 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640556516 |
Product | OmpA-like transmembrane domain-containing protein |
Protein accession | YP_001237674 |
Protein GI | 148253089 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0187168 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.160619 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCCCCCCT TCAAGTCGTC GGTCGGATCG CTCTTCGGCG GCCTGCAGCT CGGCTATAAT CGTGAGTTGC CCTCCCGCGT GGTGCTCGGC GTGGAAACTG ACTTGTCGTT CCCGAACTAT CTCGACTTCG ACGACATCAT CTGGTCGGGC GTGAACGCAA ATGGTCGCGT CACGGAGAAG GTCGATTATT ACGGCAGCCT TCGTGGGCGG ATCGGATACG CGCCAGCCCG ATGGCTTATC TACGCGACCG CCGGGCTCGC CTACAGCCAA GGCCGTCTCA CCGAGGATCC GTTTGATCCG GCGACCCAGA AGAAGATCGG TTTTCGCGCC GGCTGGGTGG CGGGCGCGGG CGTCGAGGCG CCCGTTGATG GCAACTGGAC CGCTCGGATC GAGTATCTCT ACAGCAATTT CGGCTCGTTG AACGTGATGC TGCCCTCGGG CACGAGCTAC GGTTCGACCT TCGATCTGCA CACGGTCAGG CTCGGCCTCA ACCGCAAGCT CGGCGGTTCG GCCAAGGAAC CGAGTGGCGC GGGCGACACG ATCACCTCGC CCATCTACTG GGAGATGCAG GGCCAGTCGA CCTACATCCA GCAAGGCTAT CCGGCATTTC GCTCGCCCTA TTACAGCACC AACAGCTTCA CCCCGGGGGC GCAGTCGCGA GAGACCTGGA GCAACAGCCT GTTCCTCGGC GTTAAGCTGT GGGACGGCGG CGAGTTCTAC TATAATCCGG AATTGATCCA GGGATATGGC CTGAACGCGA CGTTCGGCGC CGCCGGCTTC CCGAACGGCG AGGCCCAGAA GTCGAACTTC TCCTATCCTC ATTACATCAC CTCGCGCCTG TACCTGCGGC AGACCTTCGG CCTCGGTGGT GAGCAGGAGA CGGTCCAAAG TGACTACGGC CAGATGGCTG GGAAACGCGA CGTCTCGCGC CTCACCTTCC AGATCGGCAA GTTCGCGGTG CATGACATGT TCGACAACAA CACCTACGCT CAGGACCCGC GCACTCAATT CCTGAACTGG TCGATCTGGG CGGCCGGCGC GTTCGACTAC CCCGGCGACA TGGTCGGGCT GACCTACGGC GCGGCGGCGG AATTGAACCA GCAGGCATGG GCCGTGCGCG CCGGCTATTT CCTGGTTGTC GTCCATCCCA ACACCAATGA CTTCGACATG GAGCTCGGGA AGCGCGGTGG CTATGTCGGA GAGTTCGAAA CGCGTTATGA AGTCCTGTCG AGGCCGGGCA AGCTGCGCGT CATCGGCTGG ATGCATGACA CGCTCTCGGG AGGATACCGC GACGCCTTGA ATCTGGCGGC TGCAACGCCC GGGCTGGACC TCACTACCGC GATCGACCTG ACCCAGCAGG GCCGGATCAA GTACGGCTAT GTCTTTAATG TCGAGCAGGC GGTCACCGAT GACATCGGCG TGTTCGGGCG CTGGAGCTGG AACAACGGCA AGAACCAGAT CTCGGCGTTT ACCGATATCG ACTCTAGCCT GTCTGGCGGC GTATCGATCA AAGGCACCTC GTGGGGCCGT CCCGAGGACA CAGTCGGCCT GGCCGGGGCG GTCAACGAGA TTTCCAAGGA TCACCGCGAC TTCCTTGCGG CCGGTGGCAT GGGAATCCTG GTCGGCGACG GCCGCCTCAA CTACCGGCCG GAGCGGATTC TGGAGACCTA TTACACGGTG AAGGTTGCGA AGGACGCCAC CTTCACCTTC GACTATCAGT TCCTGCAGAA CCCCGCCTAC AATGCCGATC GCGGACCAGT CTCGGTGTTG TCCGGCCGGG TTCACGCGCA GTTCTGA
|
Protein sequence | MPPFKSSVGS LFGGLQLGYN RELPSRVVLG VETDLSFPNY LDFDDIIWSG VNANGRVTEK VDYYGSLRGR IGYAPARWLI YATAGLAYSQ GRLTEDPFDP ATQKKIGFRA GWVAGAGVEA PVDGNWTARI EYLYSNFGSL NVMLPSGTSY GSTFDLHTVR LGLNRKLGGS AKEPSGAGDT ITSPIYWEMQ GQSTYIQQGY PAFRSPYYST NSFTPGAQSR ETWSNSLFLG VKLWDGGEFY YNPELIQGYG LNATFGAAGF PNGEAQKSNF SYPHYITSRL YLRQTFGLGG EQETVQSDYG QMAGKRDVSR LTFQIGKFAV HDMFDNNTYA QDPRTQFLNW SIWAAGAFDY PGDMVGLTYG AAAELNQQAW AVRAGYFLVV VHPNTNDFDM ELGKRGGYVG EFETRYEVLS RPGKLRVIGW MHDTLSGGYR DALNLAAATP GLDLTTAIDL TQQGRIKYGY VFNVEQAVTD DIGVFGRWSW NNGKNQISAF TDIDSSLSGG VSIKGTSWGR PEDTVGLAGA VNEISKDHRD FLAAGGMGIL VGDGRLNYRP ERILETYYTV KVAKDATFTF DYQFLQNPAY NADRGPVSVL SGRVHAQF
|
| |