Gene BBta_0062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0062 
Symbolpnp 
ID5153082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp63789 
End bp65951 
Gene Length2163 bp 
Protein Length720 aa 
Translation table11 
GC content65% 
IMG OID640555091 
Productpolynucleotide phosphorylase/polyadenylase 
Protein accessionYP_001236270 
Protein GI148251685 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 
TIGRFAM ID[TIGR03591] polyribonucleotide nucleotidyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.733598 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTACCA AGCATTCCGT CGAGATCGAC TGGGGTGGAC GTCCGCTCAA GCTTGAAACC 
GGCAAGATCG CCCGCCAGGC CGACGGCGCC GTCGTCGCCA CCTATGGCGA GACCGTCGTG
CTCGCCACCG TCGTGGCCGC CAAGTCGCCG CGCGAAGGCG TCGACTTCCT GCCGCTGACC
GTCGACTATC AGGAAAAGGC CTATGCGGCC GGTCGCATCC CCGGCGGCTA TTTCAAGCGT
GAAGGCCGTC CGACCGAGAA GGAGACGCTG GTCTCCCGCC TGATCGACCG CCCGATCCGT
CCGCTGTTCG TCGACGCCTG GCGCAACGAG ACCCAGGTGA TCGTGACCAC CCTGTCGCAC
GACATGGAGA ACGATCCGGA CATCCTGGCG ATGGTCGCAG CCTCCGCAGC GCTGACCCTG
TCGGGCGTGC CGTTCAAGGG CCCGATCGGC GCCGCGCGCG TCGGCTTCGC CAATGACGAA
TACATCCTCA ATCCGACCCT CGACGAGATG ACCGACACCC AGCTCGATCT GGTCGTCGCC
GGCACCTCGG ACGCGGTGCT GATGGTGGAA TCGGAGGCCA AGGAGCTCAA CGAGGACATC
ATGCTCGGCG CGGTGATGTT CGGTCACCGT CACTTCCAGC CGGTGATCAA CGCGATCATC
GAGCTCGCCG AGAAGGCCGC CAAGGAGCCG CGCGACGTCG CGATCATCGA CAACAGCGCG
ATCGAGAAGG AAATGCTGGG CATCGCCGAG CAGGACCTGC GCAAGGCCTA TGCGATCCCG
GTCAAGCAGG AGCGCTACGC CGCCGTCGCC GCGGTCAAAG AAAAGGTGAT GGCCTACTTC
TTCCCAGAAG GGCAGGAGCC GAAATACGAG AAGCTGCGCG TTGCCGACGT GTTCAAGGAG
CTGGAAGCGA AGATCGTTCG CTGGAACATC CTGGACACCG GCCGCCGCAT CGACGGCCGC
GACGTCAAGA CCGTCCGCAA CATCGTGTGC GAGGTCGGCG TGCTGCCGCG CGCCCACGGC
TCGGCGCTGT TCACCCGCGG CGAGACCCAG GCGCTGGTCG TGACCACGCT CGGCACCGGC
GAGGACGAGC AGTATATCGA CGCGCTGTCG GGAACGTACA AAGAGACGTT CCTGCTGCAC
TACAACTTCC CTCCCTATTC GGTCGGTGAG ACCGGTCGTC TCGGCGGCAC CAAGCGCCGC
GAGATCGGCC ATGGCAAGCT GGCCTGGCGC GCGATCCACC CGGTGCTGCC GCCGCATCAC
GAGTTCCCCT ACACCACCCG CGTGGTGTCG GAGGTGACCG AGTCCAACGG CTCGTCGTCG
ATGGCCACCG TCTGCGGCTC GTCGCTGGCG CTGATGGATG CCGGCGTGCC GCTGAAGCGG
CCGACCGCCG GCATCGCGAT GGGTCTGATC CTGGAAGGCA GCCGCTACGC GGTTCTGTCG
GACATCCTCG GCGACGAGGA TCATCTCGGC GACATGGACT TCAAGGTCGC GGGCACCGAG
AGCGGCATCA CCTCGCTGCA GATGGACATC AAGATCGAGG GCATCACCGA GGAGATCATG
CGGGTTGCGC TGGGCCAGGC CCGCGAAGGC CGCATCCATA TCCTGGGTGA AATGTCCAAG
GCGCTGACCG CTGCGCGCGC CGAGCTCGGC GAATACGCGC CGCGCATCGA AACCTTCAAG
ATCCCGACCG ACAAGATCCG CGAAGTGATC GGCACCGGCG GCAAGGTGAT CCGCGAGATC
GTCGAGAAGA CCGGCGCCAA GGTCAACATC GAGGACGACG GCACCGTCAA GGTCGCCTCG
AGCGATGGCG AGGCGATGAA GGCCGCCATC AAGTGGATCA AGTCGATCGC CTCCGATCCG
GAGATCGGCC AGATCTATGA CGGCACCGTC GTCAAGGTGA TGGAGTTCGG CGCCTTCGTG
AACTTCTTCG GCACCCGCGA CGGCCTCGTC CATATCTCGC AGCTCGCCGA CAAGCGCGTG
CAGAAGACCA CCGACGTCGT CAAGGAAGGC GACAAGGTCA AGGTCAAGCT GCTCGGCTTC
GACGATCGGG GCAAGACCCG CCTGTCGATG AAGGCGGTCG ACCAGACCAC CGGCGAAGAC
CTCGAAGCCA AGCAGAAGGC CGAAGGCGGC GCCGAGGCAC CGCGTGAGGC CGCTGGCGAG
TAA
 
Protein sequence
MFTKHSVEID WGGRPLKLET GKIARQADGA VVATYGETVV LATVVAAKSP REGVDFLPLT 
VDYQEKAYAA GRIPGGYFKR EGRPTEKETL VSRLIDRPIR PLFVDAWRNE TQVIVTTLSH
DMENDPDILA MVAASAALTL SGVPFKGPIG AARVGFANDE YILNPTLDEM TDTQLDLVVA
GTSDAVLMVE SEAKELNEDI MLGAVMFGHR HFQPVINAII ELAEKAAKEP RDVAIIDNSA
IEKEMLGIAE QDLRKAYAIP VKQERYAAVA AVKEKVMAYF FPEGQEPKYE KLRVADVFKE
LEAKIVRWNI LDTGRRIDGR DVKTVRNIVC EVGVLPRAHG SALFTRGETQ ALVVTTLGTG
EDEQYIDALS GTYKETFLLH YNFPPYSVGE TGRLGGTKRR EIGHGKLAWR AIHPVLPPHH
EFPYTTRVVS EVTESNGSSS MATVCGSSLA LMDAGVPLKR PTAGIAMGLI LEGSRYAVLS
DILGDEDHLG DMDFKVAGTE SGITSLQMDI KIEGITEEIM RVALGQAREG RIHILGEMSK
ALTAARAELG EYAPRIETFK IPTDKIREVI GTGGKVIREI VEKTGAKVNI EDDGTVKVAS
SDGEAMKAAI KWIKSIASDP EIGQIYDGTV VKVMEFGAFV NFFGTRDGLV HISQLADKRV
QKTTDVVKEG DKVKVKLLGF DDRGKTRLSM KAVDQTTGED LEAKQKAEGG AEAPREAAGE