Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | B21_03315 |
Symbol | mdtF |
ID | 8114179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli BL21 |
Kingdom | Bacteria |
Replicon accession | NC_012892 |
Strand | + |
Start bp | 3520812 |
End bp | 3523925 |
Gene Length | 3114 bp |
Protein Length | 1037 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644849492 |
Product | hypothetical protein |
Protein accession | YP_003001065 |
Protein GI | 251786761 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAACT ATTTTATTGA TCGCCCGGTT TTTGCCTGGG TACTTGCCAT TATTATGATG CTTGCAGGTG GTCTGGCGAT CATGAACTTA CCGGTTGCGC AGTATCCGCA GATTGCGCCA CCGACCATTA CCGTCAGCGC TACCTATCCA GGTGCCGATG CGCAAACGGT AGAAGACTCG GTCACTCAGG TGATTGAGCA AAATATGAAT GGGCTTGATG GCCTGATGTA CATGTCTTCA ACCAGTGATG CGGCGGGCAA TGCCTCTATC ACTCTGACCT TCGAGACTGG GACATCTCCT GATATCGCAC AGGTTCAAGT GCAAAATAAA CTGCAACTCG CTATGCCTTC ATTACCTGAA GCAGTGCAGC AGCAGGGGAT TAGCGTCGAT AAGTCGAGCA GTAATATCCT GATGGTAGCG GCGTTTATTT CTGATAACGG CAGCCTCAAC CAGTACGATA TCGCGGACTA TGTAGCGTCT AATATCAAAG ACCCGCTAAG CCGTACCGCG GGCGTTGGTA GCGTACAACT CTTTGGTTCC GAGTATGCCA TGCGTATCTG GCTGGACCCG CAAAAACTCA ATAAATATAA CCTGGTACCT TCCGATGTTA TTTCCCAGAT TAAGGTGCAA AACAACCAGA TTTCCGGTGG TCAACTGGGT GGCATGCCAC AGGCGGCAGA CCAGCAGCTA AACGCCTCGA TCATTGTGCA GACGCGTCTG CAAACGCCGG AAGAATTTGG CAAAATCCTG TTGAAAGTTC AGCAAGATGG TTCGCAAGTG CTGCTGCGTG ATGTCGCTCG CGTCGAACTT GGGGCGGAAG ATTATTCCAC CGTGGCGCGC TATAACGGCA AACCTGCTGC CGGGATCGCC ATCAAACTGG CTGCCGGAGC AAACGCCCTG GATACCTCGC GGGCAGTCAA AGAGGAACTG AACCGCTTAT CAGCCTATTT CCCGGCAAGT CTGAAGACGG TTTATCCTTA CGACACCACG CCGTTTATCG AAATTTCTAT TCAGGAAGTT TTCAAAACAC TGGTTGAGGC TATCATCCTA GTCTTCCTGG TCATGTATCT GTTTTTGCAG AATTTCCGTG CCACAATCAT CCCGACGATT GCCGTACCGG TGGTTATTCT CGGGACGTTT GCGATCTTGT CGGCGGTCGG TTTCACCATC AACACGTTGA CTATGTTCGG GATGGTGCTG GCGATAGGGT TACTGGTGGA TGACGCCATC GTGGTGGTGG AGAACGTCGA GCGTGTCATT GCGGAAGATA AGCTACCGCC GAAGGAAGCG ACGCATAAAT CGATGGGGCA GATCCAACGT GCGCTGGTCG GTATTGCCGT TGTTCTTTCC GCAGTGTTTA TGCCGATGGC CTTTATGAGC GGTGCAACCG GGGAGATCTA CCGCCAGTTC TCCATCACGC TGATCTCCTC CATGCTGCTT TCAGTATTTG TGGCAATGAG CCTGACCCCT GCCCTGTGCG CCACCATTCT GAAAGCCGCG CCGGAAGGCG GTCACAAACC TAACGCCCTG TTCGCACGCT TCAACACGCT GTTTGAAAAA TCAACTCAAC ACTATACCGA TAGCACCCGC TCGCTGTTGC GTTGTACCGG TCGCTACATG GTGGTCTACC TGCTGATTTG CGCCGGGATG GCGGTGCTGT TCCTGCGCAC GCCGACCTCT TTCTTACCAG AAGAGGATCA GGGGGTATTT ATGACCACCG CGCAGTTACC TTCCGGTGCC ACCATGGTTA ACACCACGAA AGTGCTGCAA CAGGTGACGG ATTATTATCT GACTAAAGAG AAAGATAATG TCCAGTCGGT GTTTACCGTT GGCGGCTTTG GCTTCAGCGG TCAGGGGCAA AACAACGGCC TGGCGTTTAT CAGTCTCAAG CCGTGGTCTG AACGTGTCGG TGAGGAAAAC TCGGTTACCG CGATCATTCA GCGGGCAATG ATTGCGTTAA GCAGTATCAA TAAAGCCGTC GTCTTCCCGT TCAACTTACC CGCGGTGGCT GAACTGGGTA CCGCGTCAGG TTTTGATATG GAACTGCTGG ACAACGGTAA CCTGGGGCAC GAAAAACTAA CCCAGGCGCG AAACGAGCTG TTATCACTGG CAGCGCAATC ACCGAATCAG GTCACCGGGG TACGCCCGAA CGGCCTGGAA GATACGCCGA TGTTCAAAGT GAACGTCAAC GCTGCGAAAG CTGAAGCGAT GGGCGTGGCG CTGTCTGATA TCAACCAGAC AATTTCCACC GCCTTCGGCA GCAGCTACGT GAACGACTTC CTCAACCAGG GGCGGGTGAA AAAAGTGTAT GTCCAGGCAG GCACGCCGTT CCGTATGTTG CCGGATAACA TCAACCAATG GTATGTACGC AACGCCTCTG GCACGATGGC ACCGCTTTCT GCCTACTCGT CTACCGAATG GACCTATGGT TCACCGCGAC TGGAACGCTA CAACGGCATC CCGTCAATGG AGATTTTAGG TGAAGCGGCG GCCGGGAAAA GTACCGGTGA CGCCATGAAA TTTATGGCAG ACCTGGTCGC TAAACTTCCG GCAGGCGTCG GCTACTCATG GACCGGACTA TCGTATCAGG AAGCGTTATC CTCAAATCAG GCTCCTGCGC TGTATGCGAT TTCACTGGTC GTGGTGTTCC TCGCCCTCGC CGCACTCTAT GAGAGCTGGT CAATTCCGTT CTCGGTGATG TTGGTTGTTC CGTTAGGCGT CGTTGGCGCA TTACTGGCCA CCGATCTGCG CGGCTTAAGT AATGACGTCT ACTTCCAGGT TGGTTTGCTG ACCACCATCG GGCTTTCCGC CAAAAACGCC ATCCTGATTG TCGAATTTGC CGTTGAGATG ATGCAGAAAG AAGGGAAAAC GCCGATAGAG GCAATCATCG AAGCGGCGCG GATGCGTTTA CGCCCAATCC TGATGACCTC TCTGGCCTTT ATTCTCGGCG TGCTGCCGCT GGTTATCAGT CATGGTGCCG GTTCTGGCGC GCAAAACGCG GTAGGTACCG GCGTGATGGG CGGGATGTTT GCCGCAACAG TGCTGGCAAT TTACTTCGTT CCGGTCTTTT TCGTTGTAGT GGAACATCTC TTTGCCCGCT TTAAAAAAGC GTAA
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Protein sequence | MANYFIDRPV FAWVLAIIMM LAGGLAIMNL PVAQYPQIAP PTITVSATYP GADAQTVEDS VTQVIEQNMN GLDGLMYMSS TSDAAGNASI TLTFETGTSP DIAQVQVQNK LQLAMPSLPE AVQQQGISVD KSSSNILMVA AFISDNGSLN QYDIADYVAS NIKDPLSRTA GVGSVQLFGS EYAMRIWLDP QKLNKYNLVP SDVISQIKVQ NNQISGGQLG GMPQAADQQL NASIIVQTRL QTPEEFGKIL LKVQQDGSQV LLRDVARVEL GAEDYSTVAR YNGKPAAGIA IKLAAGANAL DTSRAVKEEL NRLSAYFPAS LKTVYPYDTT PFIEISIQEV FKTLVEAIIL VFLVMYLFLQ NFRATIIPTI AVPVVILGTF AILSAVGFTI NTLTMFGMVL AIGLLVDDAI VVVENVERVI AEDKLPPKEA THKSMGQIQR ALVGIAVVLS AVFMPMAFMS GATGEIYRQF SITLISSMLL SVFVAMSLTP ALCATILKAA PEGGHKPNAL FARFNTLFEK STQHYTDSTR SLLRCTGRYM VVYLLICAGM AVLFLRTPTS FLPEEDQGVF MTTAQLPSGA TMVNTTKVLQ QVTDYYLTKE KDNVQSVFTV GGFGFSGQGQ NNGLAFISLK PWSERVGEEN SVTAIIQRAM IALSSINKAV VFPFNLPAVA ELGTASGFDM ELLDNGNLGH EKLTQARNEL LSLAAQSPNQ VTGVRPNGLE DTPMFKVNVN AAKAEAMGVA LSDINQTIST AFGSSYVNDF LNQGRVKKVY VQAGTPFRML PDNINQWYVR NASGTMAPLS AYSSTEWTYG SPRLERYNGI PSMEILGEAA AGKSTGDAMK FMADLVAKLP AGVGYSWTGL SYQEALSSNQ APALYAISLV VVFLALAALY ESWSIPFSVM LVVPLGVVGA LLATDLRGLS NDVYFQVGLL TTIGLSAKNA ILIVEFAVEM MQKEGKTPIE AIIEAARMRL RPILMTSLAF ILGVLPLVIS HGAGSGAQNA VGTGVMGGMF AATVLAIYFV PVFFVVVEHL FARFKKA
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