Gene Avin_48220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_48220 
Symbol 
ID7763683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand
Start bp4886307 
End bp4887341 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content67% 
IMG OID643807665 
Productcyclic di-GMP signal transduction protein 
Protein accessionYP_002801900 
Protein GI226946827 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.590583 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGACC TCAAGGTTAG CGACAGCGTC TATGGTGCGA CTCACGAGGC CATCGCGCGG 
ACCTTGCGTT TCGCGCTGGA AATCGTCAGC GACGGCATCT GGGACTGGGA CATCCGCACC
GACCACGTCA AGCGCAGTCC GGGCTGGTAT TCCATGCTCG GTTACGCCGT GGACAGCCTG
CCGGAGAACG TCCTGACCTG GCACCAGGTG ATCCACCCGG AAGACTTCGA GCGGGTCATG
CGCGGCTTCC GGGCCTATCT GGACGGGACG CACCCCGTCT ACGCAGAGGA ATACCGCTGC
CGCTGCCGCA ACGGCGACTA CCTGTGGATC AGCGATCACG GCCGTTTCGT CGAGTTCGAC
AAAGAGGGGC GGGCGACCCG GATGATCGGC GCGCACCGCA ACATACACGA GCGCAAGCTG
GCCGAGCTGG CCCTGCAGCG CAAGAATCAG GAACTGCTGG CGCTCAACCA GGCCCTCGAA
GACCTGGTGG CGGCGCGCAC CGAAGCCTTG CGCCGGGCAA ACCGGGCCCT GGCCGAGCAG
GCCGCACAGG CCCTGCGTCT CAGCGAGATC GACCCGCTTA CCCAGATCGC CAACCGCCGC
TGCCTCGAAA GGCAACTGCA GGTCGAATGG CATCGCCTGC AACGCCATGG CCATCCCTGT
GCACTACTGA TGTTCGACCT CGACCATTTC AAGCGGATCA ACGATGGTTT CGGTCACCAG
GCCGGGGACC GGGTGCTGGT CGCGGTCGCG CAGGCGGTGC GCCAGGATCT GCGGGACGTG
GATTGCTTCG CCCGCTGGGG CGGCGAGGAG TTCATCGTGT TGCTGCCGGA AACCGATGCG
GCGGCGGCCG GGTCGCTGGC GGAGCGCCTG CGCCTGAACC TGCGGCGGAT CGATGTCGCT
TTGCCGATGC CGCTCACCGC CAGTTTCGCC GTGGCGCAGA TGGTCGCGGA CGAGGCGCCG
GGCGACCTGG TGCGCCGCCT GGATGCGGCG CTCTACCAGG CCAAGCGGCA GCGGGACTGC
ATCGTGGTCA GTTAG
 
Protein sequence
MDDLKVSDSV YGATHEAIAR TLRFALEIVS DGIWDWDIRT DHVKRSPGWY SMLGYAVDSL 
PENVLTWHQV IHPEDFERVM RGFRAYLDGT HPVYAEEYRC RCRNGDYLWI SDHGRFVEFD
KEGRATRMIG AHRNIHERKL AELALQRKNQ ELLALNQALE DLVAARTEAL RRANRALAEQ
AAQALRLSEI DPLTQIANRR CLERQLQVEW HRLQRHGHPC ALLMFDLDHF KRINDGFGHQ
AGDRVLVAVA QAVRQDLRDV DCFARWGGEE FIVLLPETDA AAAGSLAERL RLNLRRIDVA
LPMPLTASFA VAQMVADEAP GDLVRRLDAA LYQAKRQRDC IVVS