Gene Avin_45280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_45280 
SymbolpilO 
ID7763396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand- 
Start bp4594062 
End bp4594682 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content57% 
IMG OID643807376 
ProductPilus assembly protein 
Protein accessionYP_002801617 
Protein GI226946544 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCTGT CCGGGTCCCT GGAGAGTCTG CGCAAGATCG ATCTGGCCGA TCTGGATCTG 
GACAACCTCG GCTCGTGGCC GGCTCCGCTG AGGACCGCCA CCTGCCTGCT GATGCTGATC 
GTTGTTCTGG CGCTGGGCTA CAACTTCCAT CTCAAGGATC TGCAGGCGCA GCTCGAGCGG 
GAGCGGGGCG AAGAGGGGGC CTTGAAGCAG CAGTTCTCCA CCAAGGCTTT CCAGGCCGCG 
AACCTGGAAG CCTACAGGCA GCAGATGGCG GAAATGGAGG CCTCTTTCGG CGCCTTGTTG 
CGGCAATTGC CGAGCGATAC CGAGGTGCCC GCTCTGCTCG ATGACATCAC CCGTACCGGA 
CTGGGCAGCG GCCTGGAGTT CGAGGAAATC AAACTTCTCG ACGAAGTTGT CCGGCAGTTC 
TATATCGAAT TGCCGATCCA AATATCCGTA ATGGGTGCTT ATCACGATCT GGCTACTTTC 
GTAAGTGGCG CCGCCAGTCT TCCACGCATC GTCACATTGC ATGATTTCGA AATAAAACCA 
GTGGCTTCGG GAAATACGAA GTTGCGCATG AAGATATTGG CCAAGACCTA TCGCTATAAC 
GACAAGGGAC CGCAGAAATG A
 
Protein sequence
MSLSGSLESL RKIDLADLDL DNLGSWPAPL RTATCLLMLI VVLALGYNFH LKDLQAQLER 
ERGEEGALKQ QFSTKAFQAA NLEAYRQQMA EMEASFGALL RQLPSDTEVP ALLDDITRTG 
LGSGLEFEEI KLLDEVVRQF YIELPIQISV MGAYHDLATF VSGAASLPRI VTLHDFEIKP 
VASGNTKLRM KILAKTYRYN DKGPQK