Gene Avin_44600 details

Gene Information

• Locus tag: Avin_44600
• Symbol: thiC
• ID: 7763331
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 4510561
• End bp: 4512447
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 643807312
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_002801553
• Protein GI: 226946480
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.168262
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGTGA CAGAACAACA GAAGAACCTG AGCGAGTCCG CCCAGGTCGA CCAGCAGTCC 
GTACAGCCCT TCCCGCGTTC GCGGAAGATC TACGTCACCG GCTCGCGCCC GGACATCCGC 
GTGCCGATGC GCGAGATCGG CCTGGACGTG ACACCCACCG CGTTCGGCGG CGAGATCAAC 
CCGCCGGTCA CCGTCTACGA CACCTCCGGC CCCTACACCG ACCCGAACGT CGTCATCGAC 
GTGCGCAAGG GGCTGGCCGA CGTGCGCAGC GCCTGGATCG AGGATCGCGG CGACACCGAG 
AAGCTGCCGG GCCTGACCTC GGAGTTCGGC CAGCGCCGCC TCTCCGACCC GGAACTGGCC 
GCCATGCGCT TCGCCCACGT ACGCAACCCG CGCCGCGCCA AGGCCGGGCA CAACGTCACG 
CAGATGCACT ATGCCAGGAA AGGCATCGTC ACCCCGGAGA TGGAATACGT CGCCATCCGC 
GAGAACATGA AGCTCGCCGA GGCGCGCGAG GCCGGCCTGC TCGCCGCGCA GCATCCGGGG 
CAGAGCTTCG GCGCCAGCAT TCCGAAGGAA ATCACCCCCG AGTTCGTCCG AGCCGAAGTC 
GCCCGCGGCC GCGCCATCAT CCCGGCCAAC ATCAACCACG TGGAGCTGGA GCCGATGATC 
ATCGGCCGCA ACTTCCTGGT GAAGATCAAC GGCAATATCG GCAACTCGGC GCTGGGATCG 
AGCATCGAAG AGGAAGTGGC CAAGCTGACC TGGGGCATCC GCTGGGGCTC GGACACCGTG 
ATGGACCTGT CCACCGGCAA GCACATCCAC GAGACCCGCG AGTGGATCAT CCGCAACTCG 
CCGGTGCCGA TCGGCACGGT GCCGATCTAC CAGGCGCTGG AAAAGGTCGG CGGCATCGCC 
GAGGACCTGA CCTGGGAGCT GTTCCGCGAC ACCCTGATCG AGCAGGCCGA GCAGGGCGTG 
GACTACTTCA CCATTCATGC CGGCGTGCTG CTGCGCTACG TGCCGCTGAC CGCGAAAAGG 
GTCACCGGCA TCGTCTCCCG CGGCGGTTCG ATCATGGCCA AATGGTGTCT GGCGCATCAC 
CAGGAAAACT TCCTCTACAC CCACTTCGAA GACATCTGCG ACATCATGAA GGCCTACGAT 
GTCAGCTTCT CCCTGGGCGA CGGCCTGCGC CCCGGCTCGG TGGCCGATGC CAACGACGCC 
GCCCAGTTCG GCGAACTGGA AACCCTCGGC GAACTGACCA GGGTCGCCTG GAAGCACGAG 
GTGCAGACCA TCATCGAAGG CCCCGGCCAC GTGCCGATGC ACATGATCAA GGAGAACATG 
GACAAGCAGC TCGAATGCTG CGACGAGGCG CCGTTCTACA CCCTCGGCCC GTTGGTCACC 
GACATCGCCC CCGGTTACGA CCACATCACC TCCGGCATCG GCGCGGCGAT GATCGGCTGG 
TTCGGCTGCG CCATGCTCTG CTACGTGACG CCCAAGGAGC ACCTCGGCCT GCCGAACAAG 
GACGATGTGA AGACCGGCAT CATCACCTAC AAGATCGCCG CGCACGCCGC CGATCTGGCC 
AAGGGCCATC CGGGCGCGCA GATCCGCGAC AACGCGCTGA GCAAGGCGCG CTTCGAGTTC 
CGCTGGGAGG ACCAGTTCAA CCTCGGCCTC GATCCGGACA CCGCGCGTGC CTTCCACGAC 
GAGACCCTGC CCAAGGACTC GGCCAAGGTG GCGCACTTCT GCTCCATGTG CGGGCCGAAG 
TTCTGTTCGA TGAAGATCAC CCAGGAAGTG CGCGACTACG CCGCCGAGCA CGGCCTGTCC 
GAGGAAAGCC AGGCCGTCGA GGCCGGTTTC CGGGAGCAGG CCGAGCGCTT CCGCGAAGAG 
GGCTCGGTGA TCTACAAGCA GGTCTGA 

 

Protein sequence

MNVTEQQKNL SESAQVDQQS VQPFPRSRKI YVTGSRPDIR VPMREIGLDV TPTAFGGEIN 
PPVTVYDTSG PYTDPNVVID VRKGLADVRS AWIEDRGDTE KLPGLTSEFG QRRLSDPELA 
AMRFAHVRNP RRAKAGHNVT QMHYARKGIV TPEMEYVAIR ENMKLAEARE AGLLAAQHPG 
QSFGASIPKE ITPEFVRAEV ARGRAIIPAN INHVELEPMI IGRNFLVKIN GNIGNSALGS 
SIEEEVAKLT WGIRWGSDTV MDLSTGKHIH ETREWIIRNS PVPIGTVPIY QALEKVGGIA 
EDLTWELFRD TLIEQAEQGV DYFTIHAGVL LRYVPLTAKR VTGIVSRGGS IMAKWCLAHH 
QENFLYTHFE DICDIMKAYD VSFSLGDGLR PGSVADANDA AQFGELETLG ELTRVAWKHE 
VQTIIEGPGH VPMHMIKENM DKQLECCDEA PFYTLGPLVT DIAPGYDHIT SGIGAAMIGW 
FGCAMLCYVT PKEHLGLPNK DDVKTGIITY KIAAHAADLA KGHPGAQIRD NALSKARFEF 
RWEDQFNLGL DPDTARAFHD ETLPKDSAKV AHFCSMCGPK FCSMKITQEV RDYAAEHGLS 
EESQAVEAGF REQAERFREE GSVIYKQV