Gene Avin_41090 details

Gene Information

• Locus tag: Avin_41090
• Symbol: mscL
• ID: 7762992
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 4142688
• End bp: 4143098
• Gene Length: 411 bp
• Protein Length: 136 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643806966
• Product: large-conductance mechanosensitive channel
• Protein accession: YP_002801217
• Protein GI: 226946144
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.629414
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCATGC TCAGCGAATT CAAGGCTTTC GCCGTCAAGG GCAACGTGGT GGACATGGCG 
GTGGGGATCA TCATCGGCGC GGCCTTCGGC AAGATCGTCT CGTCCTTCGT CGGGGACGTG 
ATCATGCCGC CGCTCGGCCT GTTGATCGGC GGAGTGGACT TCTCCGATCT GGCCATCACC 
CTCAAGCAGG CCCAGGGCGA CATGCCCGCG GTGGTGCTGG CCTATGGCCG GTTCATCCAG 
ACGGTGATCG ATTTCCTGAT CATCGCCTTC GCCATCTTCA TCGGCGTCAA GGCGCTCAAC 
CAGCTCAAGC GCAAGGAGGC CGAGGCGCCG AGCCTGCCGC CGGCGCCGAC CCGCGACCAG 
CAACTGCTCG AAGAGATCCG CGACCTGCTC AAGACGCGGG GCAAATCCTG A 

 

Protein sequence

MGMLSEFKAF AVKGNVVDMA VGIIIGAAFG KIVSSFVGDV IMPPLGLLIG GVDFSDLAIT 
LKQAQGDMPA VVLAYGRFIQ TVIDFLIIAF AIFIGVKALN QLKRKEAEAP SLPPAPTRDQ 
QLLEEIRDLL KTRGKS