Gene Avin_26630 details

Gene Information

• Locus tag: Avin_26630
• ID: 7761571
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 2728190
• End bp: 2730052
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 643805541
• Product: hypothetical protein
• Protein accession: YP_002799814
• Protein GI: 226944741
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.268806
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGCGC GTCTACTGGA TTACTACAAC CGGGAACTGG GCTACCTGCG CGAGCTGGGA 
GCGGAGTTCG CCGAACGTTT TCCCAAGGTG GCCGGCCGCC TGGGCATGCA CGGCATCGAA 
ATCGCCGACC CCTATGTCGA GCGCCTGCTC GAAGGTTTCA GCTTCCTCAC CGCGCGCATC 
CAACTGAAGA TGGACGCGGA GTTTCCGCGC CTTTCCCAGC ACCTGCTCGA TGTGATCCAT 
CCCAACTACT CGGCGCCGAT GCCGGCGATG GCCATCGTCA GGCTGCAACC CAGCCTCAAC 
GAGGGCAGCC TGGCCAACGG CTTCACGCTG CCCGCCGGCA CCGCGCTGCA TGCCAACCTG 
GCCCACGGCG AGCAGACCGT CTGCGAGTTC CGCACCGGCC ATGCGCTCAC CCTGTGGCCG 
CTGGAGCTGG ACGGCGTGCA CTACGGCCGG GTGCCCACCG ACCTGCCCGC CGGGGCATAC 
CGGCAGCGCG CCCGCGCCGC CCTGCGCATC CGCCTGCGCA TCACCGCCGG CCAGCGCTGC 
GACAGCCTGG CCCTGGAGCG GCTGGAGTTC CACCTGGCGG GCCCCGAGCA GCGGGCGCTG 
CGCCTGCTGG AGCTGATCGC CGGTCACAGC GTCGCGGTGC TCTGCCGCGA GGCCGGCCCG 
GACGGCGCCT GGGGCACGCC GCTGGACGCC GCCTGCGTGC GTCACGAGGG CTTTTCCGCC 
AGCCAGGCGC TGTTGCCCGA CGACGGCCGC ACCTTCCAGG GCTACCGGCT GCTGCAGGAA 
TACTTCGCCT GCCCGGCGCG TTTCCTGTTC TTCAGCGTCG GCGGCCTGCG CCGCGCGCTG 
CAGGGGCTGC GGGGCGAGCG CTTCGAACTG CTGCTGCTGT TCGATCAGGA CGACGCCGCA 
CTGGAGCGCC TGGTGGAGAC GGACGACCTG GCGCTGCACT GCACGCCGGT CGTCAACCTG 
TTCGCCAAGC GCGCCGACCG GGTGCTGGTC TCGCCGCGCA GCCGCGACTA CCACCTGGTG 
GTGGACCGCA CCCGGGCGCT CGACTACGAG GTGCATTCGG TCACCCGCAT GTCCGGCCAC 
GGCAGCGGCA GCGAGGCCCA GGAGTTCCGT CCGTTCTACG CCTCGTTCGG CGCCGACGGA 
CGCGACCACG GCGCCTACTA CGCGCTGCGC CGCGAGCCGC GCCTGCTCTC CGAGCAGGCC 
CGCCTGCACG GCAGCCGCAC CGGCTATGTC GGCAGCGAAA TCTTCGTTTC CCTGGTGGAT 
CAGCACGAGG CGCCCTTCGG CGCGGCGCTC CGCCATCTGG TGGTGGAGAC ACTGTGCACC 
AACCGCGACC TGCCGCTGCT GCTGCCGCTG GACGGCGACA GCGATTTCTC GCTGGCGGTA 
TCGGCCCCGG TGGGACGGGT CAAGGTGTTG CGCGGGCCGA CCCGGCCCCG GCCGTCGCTG 
GCCGAGGGCG CGCAGACCTG GAAGCTGATC AGCCACCTGG GCCTGAACCA TCGGCTCATG 
ACCGAACTGG ACGGCGAGCG CGGCGCGGCC ATGCTGCGCC AGTTGCTGGC CTTGTACCTG 
GACGACGCCG AGTCGGGCCT GCGGCGCCAG GTGGAAAGCC TGCGGCGGGT CGCCTGCAGC 
CCGGTGTTCC GCCGCCTGCC GCAACCCGGC CCCCTGATGC ACGGGCGCGG CGTGCAGGTG 
GCGGTGACGC TGGACGAACA GGCGTTCTCC GGCGACAGCC CCTTTCTGTT CGGCGCCGTG 
CTGGAGCAGT TCTTCGCCCG CCACGTGGCG ATCAACCTGT TCTCCGAACT GACGCTGCAC 
AGCCTGCAGC GCGGCCAGGT GGCGCGCTGG GCGCCCCGGC TGGGCGCGAG GCCGGTGGCA 
TGA 

 

Protein sequence

MDARLLDYYN RELGYLRELG AEFAERFPKV AGRLGMHGIE IADPYVERLL EGFSFLTARI 
QLKMDAEFPR LSQHLLDVIH PNYSAPMPAM AIVRLQPSLN EGSLANGFTL PAGTALHANL 
AHGEQTVCEF RTGHALTLWP LELDGVHYGR VPTDLPAGAY RQRARAALRI RLRITAGQRC 
DSLALERLEF HLAGPEQRAL RLLELIAGHS VAVLCREAGP DGAWGTPLDA ACVRHEGFSA 
SQALLPDDGR TFQGYRLLQE YFACPARFLF FSVGGLRRAL QGLRGERFEL LLLFDQDDAA 
LERLVETDDL ALHCTPVVNL FAKRADRVLV SPRSRDYHLV VDRTRALDYE VHSVTRMSGH 
GSGSEAQEFR PFYASFGADG RDHGAYYALR REPRLLSEQA RLHGSRTGYV GSEIFVSLVD 
QHEAPFGAAL RHLVVETLCT NRDLPLLLPL DGDSDFSLAV SAPVGRVKVL RGPTRPRPSL 
AEGAQTWKLI SHLGLNHRLM TELDGERGAA MLRQLLALYL DDAESGLRRQ VESLRRVACS 
PVFRRLPQPG PLMHGRGVQV AVTLDEQAFS GDSPFLFGAV LEQFFARHVA INLFSELTLH 
SLQRGQVARW APRLGARPVA