| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_18000 |
|---|
| Symbol | |
|---|
| ID | 7760735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 1786685 |
|---|
| End bp | 1790758 |
|---|
| Gene Length | 4074 bp |
|---|
| Protein Length | 1357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643804699 |
|---|
| Product | DEAD box and SNF-like helicase domain-containing protein |
|---|
| Protein accession | YP_002798988 |
|---|
| Protein GI | 226943915 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.153374 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGCC CAGCCGTCCG TTCGACCCTA GCCAGCCTTC CCGATGCCTA CAAGGCGCTG
CTCTATGTCC TGTTCCTGGC CAGCCCGAGG AACAAGAGCA CCCTGCTCGA ACAGCTCAAG
CGCCTTGGCG TGCGCGCCAC GACCAGTCGG GCCATGGACG GCGTGGCGCT GGGCGAGATG
CTGGAAACCC TGCAGCGGCT GAAGTGGCTG GAGCGCGGCG ACGAGCGCGA TTTTTTCAGG
CTGAATCCGC TGGCCTGCAA CCAGGTCCTG CTGTTGTTGC AGAGCGAGCC GCAGTGGTGG
CCCAAGCTGC GCGGCGGACT GGTCGAGCAT GCCGTCGCCA CGCCGGGCGG CCTGCCGGTG
AGCCTGTGGC GCGGCCTCTG GCTGGCCCTG CTGGCGGGCG AGGTGCCGGA GCTGACCCAG
TTGCTGCTCG GCATGGAGGC GGATCGGAGC GAACTGCCGC ACCCCTGCGG CCAACTGCTG
GCCGACGAAA CCGGCCGGCA ACTGTTCGCC CGGCTCACCC CGGGCGTTCG CGAGGTGCTG
CTGGAGGACT ACCTGACCCG CGCCAACGAG GGGCTGGTGG CGGCCGGGGA GACCTACCGG
CAGGGGCTGG CCCTGCTCGA CAGCGACCAG GCGAAGTCCA CCGAACTGGC CTTCCAGCTA
TTCCTGCAGG CGCTCTGGCG CGGCGACTGG ACGCGTTTCG AGGCACTCGG CCGGAGCGAA
TGGGTGCCTT TCGGCGGAGT CTTCGAGTAT CTGCTGCGCG GAAAGCCGGG CGAGGCCCTG
GAACAGATCC AGGAGTACAT CCGCATCCAG CGCGGCAGCC GCAAGCGCCG GGTCGAGCTA
CCGCCCACGC TCAACGCCTG TTACTGCCTG CTCCTGCTGG TCGACGGCGA CGGCCAGCAG
CATGCCGCGC TGCGCCAGGC GCTGGGGCTG GGACTGAAGA AAGGCCTCGG CACCGCCTAT
CAGATGTTCG AGAAGCTCTT CGAGCAGTTC CAGGGCAAGG GCGTGCGCGG TGCCGATCCG
GCCTACCGGG TTCAGCGGCT CGAGGGGTTC GACGGGCTGC TGACCGCGAT CGCCCTGTAC
TGGATGGATG CGCCGGCGTC CTCCGCCTGG CAGCGCCGCC TGGCGCAGTT CCGTACCGAG
CTGGAAGAGG AGGGCTATGC CTGGCTGGCG GCCGAACTGG ATGTCCTGCT CGAACGGCAG
TTCGGCCTGC CCCCGGCGCA GGCGGACTGG CACCGGAGCC TGGGGCTGCG TCCGCTGGTC
GACCTGTATC GCCGTCAGGA GCTGTGGGAG CACGCGCTGG CCGCGCTGGC CGCCCTGCGT
CCCGGCGCCC GCAGCAGCGC TCCGCCGCAG CCGCAGAGCA GTCATCGCCT GGCCTGGATG
ATCGGCAGTC CGCTCACCCC GAGCCCGGCC ATCGAGCCGC GCGAGCAGCG GCTCGGCGCC
AAGGGCCAGT GGAGCAAGGG CCGGCCGGTG TCGCTCAAGC GCCTGCTCGA GGAAACCGGC
AGCTTCGACT ACCTGCTGGA ACAGGACCGC CGGGCCATCC AGCAGATCCA GATGCACAGC
GACGCCTTCG GCATCCGCTA CCAGCTCGAC GGCGAGCGTG CCCTGCCGCA TCTGGTCGGA
CATCCGGCGT TGTTCTGGAG CGATGCGCCG GAGGTGCGCA TCGATCTGCT GGCCGGCAGC
GTGGCCCTGG AGTTGCGGCA GCGCGGTGCG CAGATCCACC TGGCGCTGAG TCCCGAGGGG
ATCGCGGACT GCCAGGGGCT GTTCATCGAG CGGGAAACCC CGACCCGCCT GGTGGTCTAT
CCGCTCGGCC GCGAGGCCCG GCAGATCGCT GAGATCATCG GCGGCGGGCT GACCGTGCCG
CAGGCGGCCA AGGCGCAACT GATGGAAACC ATCGGTAGCA TCGCGCCGCT TCTGCCGATC
CACTCGGACC TGCCGGAACT GGCGGTGAAC ATCGACAAGG TAACCGCCGA CGGCAAGCTG
TACGCCCACC TGCTGCCGCT GCAGGACGGT CTGCGCCTGC AATTGCTGGT GCGGCCGCTG
GCCGGCGGCA GTTGGTTCCG CCCGGGGCAG GGCGCCGAGA GCGTGCTCGG CGAGCAGGAC
GGCAAGCCGC TGCAGGCGGT GCGCGACCTG CAGGCCGAGC GCCGGAAGCT CAAGCAGGTG
CTGCAGGCCT GCCCGGCGCT GGCCGAGGCC GACAGCGAGG GGCACGAATG GCAACTGGCC
GAACCGCAGG CCGCCCTGCA GGTGTTGAGC GAACTGCAGG CGCTGGATGC CGAACTGCTC
GAATGCGTCT GGCCCGAGGG CGAGCGCATG CGCATCAGGG CCCGGCCCGG CCTGCGCCAG
TTGCAGTTGC GCCTGCGCCA GTGCGGCGAC TGGTTCGAGC TGGACGGCGA AGTGGTGGTC
GACGACGGCC GCGTGTTGAA GCTGCGCCAG TTGCTCGAAC TGCTGCAGAG CAATCCGGGG
CGCTTCGTCC GCCTCGGCGA GCAGGACTGG CTGGCCCTGG GCAGCAGCCT GCGCCGGCGC
CTGGACGAAC TGGGCCGGCT GGCCGAGCGC AGTGGCGCCG AGGGCCTGCG CCTCAATTCG
CTGACCGCGC CGCTGCTCGC CGAACTGGCC GAGGAGGTGG GCTGCTTCGA GGCCGACGCC
GCCTGGAAGG AGCATCTGTC CCGCCTCGAA TCGCTGCGCG ATTATCGGCC GCGGGTACCC
AACACCCTGC AGGCCGAGCT GCGCGACTAC CAGTTGGAGG GTTTCGACTG GATGGCGCGG
CTGGCGAAAT GGGGCGTCGG CGCCTGTCTG GCCGACGACA TGGGCCTGGG CAAGACCCTG
CAGACCCTGA CCCTGCTGCT GCACCGATCC GCCGAAGGGC CCCAACTGGT CGTGGCGCCG
ACCTCGGTGA CGCCCAACTG GCTGGCCGAG ACCACCCGCT TCGCGCCGAC CCTGCGCCTG
CACGCCTATC GCGAGAGCCG TAGCCTGGAC GGGCTGGGGC CGCGCGACCT GGTGGTGACC
AGCTACGGCC TGCTGCAGCA GGACGCCGAG TCCTTCGCCG CGCAGCGCTG GACCACCGTG
GTGCTGGACG AGGCGCAGGC GATCAAGAAC GCCGCCAGCA AGCGCTCCCA GGCGGCCATG
GCGCTGCAGG CGGATTTCCG CCTGGTCGCC ACCGGCACAC CGCTGGAGAA CCATCTGGGC
GAGCTGTGGA ACCTGTTCCG CTTCATCAAT CCCGGTCTGC TCGGCAGCCG CGAACATTTC
ACCCAGCGCT TCGCCGGCCC CATCGAGCGT GGCGATCAGG GCGCGCGCAA GGCGCTCAAG
GCGCTGATCC AGCCGTTCAT CCTGCGCCGC CTGAAGAGTC AGGTGCTCGA CGAACTGCCG
GCGCGCACCG AGGTGGTCTA CCGGGTACCG CTCTCCGACG CCGAGCAGCA CCTCTATGAG
GCCATGCGCC AGCAGGCGCT GGAGTCCATC AGCCAGAGCG GCGAGGAGGG CAGCCAGTCG
CTGCGGGTGC TCACCGAAAT CACCCGGCTG CGGCGTTTCT GTTGCCATCC GAGCCTGGTC
CTGCCGGACA GCGACCTGCC GGGAAGCAAG CTGGCGGCCT TCGCCGAGAT CGTCGAGGAA
CTGCTCGACA GCCGGCACAA GGCGCTGGTG TTCAGCCAGT TCGTCGATCA CCTGAGCATC
GTCCGCAAGT GGCTGGAGGA GCGCGGCATC CGCTACCAGT ACCTCGATGG CGCGACCCCG
GCCAAGGAAC GCATGGCGCG GGTGGAAGCC TTCCAGGGCG GCGACGGCGA CATCTTCCTG
ATCAGCCTCA AGGCCGGTGG CACCGGCCTC AACCTGACCG CCGCCGACTA CGTGATCCAT
CTCGATCCCT GGTGGAACCC GGCGGTGGAG GACCAGGCCA GCGACCGCGC CCACCGTATG
GGCCAACAGC GCCCGGTGAC CATCTACCGG CTGGTGGCGG AGAACACCAT CGAGGAGCGC
ATCCTCGCCC TGCACGGGCA GAAGCGCGAT CTGGCCGACA GCCTGCTGGA GGGAGGCGAG
GTCAGCGCCA AGCTCGACGC CGAGGCGCTG CTGCGCCTGC TGCGCGGCGG CTAG
|
|---|
| Protein sequence | MSSPAVRSTL ASLPDAYKAL LYVLFLASPR NKSTLLEQLK RLGVRATTSR AMDGVALGEM
LETLQRLKWL ERGDERDFFR LNPLACNQVL LLLQSEPQWW PKLRGGLVEH AVATPGGLPV
SLWRGLWLAL LAGEVPELTQ LLLGMEADRS ELPHPCGQLL ADETGRQLFA RLTPGVREVL
LEDYLTRANE GLVAAGETYR QGLALLDSDQ AKSTELAFQL FLQALWRGDW TRFEALGRSE
WVPFGGVFEY LLRGKPGEAL EQIQEYIRIQ RGSRKRRVEL PPTLNACYCL LLLVDGDGQQ
HAALRQALGL GLKKGLGTAY QMFEKLFEQF QGKGVRGADP AYRVQRLEGF DGLLTAIALY
WMDAPASSAW QRRLAQFRTE LEEEGYAWLA AELDVLLERQ FGLPPAQADW HRSLGLRPLV
DLYRRQELWE HALAALAALR PGARSSAPPQ PQSSHRLAWM IGSPLTPSPA IEPREQRLGA
KGQWSKGRPV SLKRLLEETG SFDYLLEQDR RAIQQIQMHS DAFGIRYQLD GERALPHLVG
HPALFWSDAP EVRIDLLAGS VALELRQRGA QIHLALSPEG IADCQGLFIE RETPTRLVVY
PLGREARQIA EIIGGGLTVP QAAKAQLMET IGSIAPLLPI HSDLPELAVN IDKVTADGKL
YAHLLPLQDG LRLQLLVRPL AGGSWFRPGQ GAESVLGEQD GKPLQAVRDL QAERRKLKQV
LQACPALAEA DSEGHEWQLA EPQAALQVLS ELQALDAELL ECVWPEGERM RIRARPGLRQ
LQLRLRQCGD WFELDGEVVV DDGRVLKLRQ LLELLQSNPG RFVRLGEQDW LALGSSLRRR
LDELGRLAER SGAEGLRLNS LTAPLLAELA EEVGCFEADA AWKEHLSRLE SLRDYRPRVP
NTLQAELRDY QLEGFDWMAR LAKWGVGACL ADDMGLGKTL QTLTLLLHRS AEGPQLVVAP
TSVTPNWLAE TTRFAPTLRL HAYRESRSLD GLGPRDLVVT SYGLLQQDAE SFAAQRWTTV
VLDEAQAIKN AASKRSQAAM ALQADFRLVA TGTPLENHLG ELWNLFRFIN PGLLGSREHF
TQRFAGPIER GDQGARKALK ALIQPFILRR LKSQVLDELP ARTEVVYRVP LSDAEQHLYE
AMRQQALESI SQSGEEGSQS LRVLTEITRL RRFCCHPSLV LPDSDLPGSK LAAFAEIVEE
LLDSRHKALV FSQFVDHLSI VRKWLEERGI RYQYLDGATP AKERMARVEA FQGGDGDIFL
ISLKAGGTGL NLTAADYVIH LDPWWNPAVE DQASDRAHRM GQQRPVTIYR LVAENTIEER
ILALHGQKRD LADSLLEGGE VSAKLDAEAL LRLLRGG
|
|---|
| |