| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_14700 |
|---|
| Symbol | lolD |
|---|
| ID | 7760406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 1452175 |
|---|
| End bp | 1452873 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643804368 |
|---|
| Product | lipoprotein-releasing ABC transporter |
|---|
| Protein accession | YP_002798661 |
|---|
| Protein GI | 226943588 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.072484 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACA TTGCCATGAA AGATCGGGCC GTTCTCAGTT GTCGTAACCT GGGCAAGCGC
TACGAGGAGG GCCCGCAGTC GGTGGTGGTG CTTTCCGGCC TGGAGCTGGA CCTGCAGCCG
GGCGAGCGGG TGGCCATCGT CGGCAGTTCG GGTTCCGGCA AGAGCACCCT GCTCAATCTG
CTCGGTGGCC TGGACACGCC CAGCGAGGGC AGCGTGTGGC TGGCCGGCGA GGAGCTCTCG
GCGCTCAGCG AGAAGGCGCG GGGCCTGCTG CGCAACCGCG CGTTGGGCTT CGTCTATCAG
TTCCATCACC TGTTGCCGGA GTTCACCGCT CTGGAAAACG TCTGCATGCC CCTGTTGATC
GCCAGGGTGG CGATTCCCGA GGCGCGCCAG CGGGCCGCCG CGCTGCTCGA GCGGGTCGGC
CTGGGCCATC GTCTCAGGCA CAAGCCGGCG GAGCTCTCCG GCGGCGAGCG CCAGCGCGTG
GCGATCGCCC GGGCCCTGGC CAACCGGCCG GGCCTGGTGT TGCTCGACGA GCCGACCGGC
AATCTCGACC AGCACACCGC CCAGGGTATC CAGGAGTTGA TGCTGGAGCT CAGCATCTCC
CTGCAAACGG CTTTCCTGGT GGTGACGCAC GATCTCCAAC TGGCCCGCCA GATGGACCGG
ATACTGCGTC TCGAAGACGG TCGGCTGGTC GCGGAGTGA
|
|---|
| Protein sequence | MSDIAMKDRA VLSCRNLGKR YEEGPQSVVV LSGLELDLQP GERVAIVGSS GSGKSTLLNL
LGGLDTPSEG SVWLAGEELS ALSEKARGLL RNRALGFVYQ FHHLLPEFTA LENVCMPLLI
ARVAIPEARQ RAAALLERVG LGHRLRHKPA ELSGGERQRV AIARALANRP GLVLLDEPTG
NLDQHTAQGI QELMLELSIS LQTAFLVVTH DLQLARQMDR ILRLEDGRLV AE
|
|---|
| |