| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_12090 |
|---|
| Symbol | pilB |
|---|
| ID | 7760150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 1161999 |
|---|
| End bp | 1163699 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643804110 |
|---|
| Product | type IV pilus assembly protein |
|---|
| Protein accession | YP_002798409 |
|---|
| Protein GI | 226943336 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGACG ACATTTCCCT CCACGGTCTG GCACGGCAGA TGGTGCTGGC CGGACTGATC
GACGAGAAGA CGGTCCTGCA GGCCCAGCGG CAGGCACAGC GCAACCAGAC CCCACTGGTC
ACCTGGCTGG TGCAGAACAA GCTGGTCAAG AGCCGGGGGT TGGCGGAGCT GGCCGCGGAG
CAGTTCGGCA TCGCCCTGTT CGATCTCGGG ACGCTGGAGC GGGAAAACCA GCCCCGCGAC
CTGCTCAGCG AGAAACTGAT CCGCCAACAT CGCGCTCTGC CGTTGTGGCG GCGCGGCAAC
CGGCTGTTCG TGGCGATTTC CGACCCGACC AACCACGAGG CAATTCGTGA GATCCGCTTC
GGCACCGGGC TGAACACCGA AGCCATCCTG GTCGAGGACG ACCGTCTGGG CGAAGCCATG
GAGAAGTACT TCGAGGGCGC CGACACCGCC CTGGACGATC TCGCAGACGC CGGGCTGGAC
GGCCTCGATA TCGAAGCCGG CGACCGGCAT GACGAAGCGC TCAATCCGGC CGGAGATGCC
GAAGATGCGC CGGTGGTGCG CTTCATCAAC AAGATATTGC TGGATGCGAT CCGCCGCGGC
TCCTCGGATC TGCACTTCGA ACCCTACGAG AAGAGCCACC GGGTGCGTTT TCGCACCGAC
GGCATCCTCC ATGAGGTGGC CCGGCCGCCC GTCCGGTCGG CGCCGAAGAT CGCCGCGCGC
CTGAAAGTGA TGGCCGGGCT GGATATCTCC GAGCGGCGCA AACCGCAGGA CGGTCGGATC
AGGATGAAGC TGCCGAAGGG CAAGGCCATC GACTTTCGGG TCAACACCCT GCCCACGCTG
TGGGGCGAAA AGGTGGTGAT GCGGATTCTC GACCCGTCCA GCGCGCAGAT GGGTATCGAT
GCCCTCGGCT ACGAGGAGAG CCAGAAGGCG CTCTACCTGG AGGCACTGAG CCAGCCGCAG
GGCATGATCC TGGTGACTGG TCCGACCGGT TCGGGCAAGA CGGTGTCCCT GTATACCGGC
CTGAACATTC TCAATACCGC GGAGGTGAAT ATCTCCACCG TCGAGGACCC GGTGGAAATC
AACCTGGAAG GCATCAACCA GGTCAACGTC AACCCACGCC AGGGCATGGA CTTCTCCCAG
GCGCTGCGCG CCTTCCTGCG CCAGGACCCG GACATCATCA TGGTCGGCGA GATCCGCGAC
CTGGAAACCG CGGAGATCGC CATCAAGGCC GCACAGACCG GCCACATGGT GATGTCCACC
CTGCACACCA ACAGCGCGGC GGAAACCCTG ACCCGCCTGC GCAACATGGG GGTGCCCTCC
TTCAATATCG CCACCTCGGT GAACCTGATC ATCGCCCAGC GCCTGGCGCG CAAGCTGTGC
GCCTGCAAGC AGGCGGTGGA CATTCCCCAC GAAACGCTGC TCGCCGAGGG ATTTCCGGAA
GAGCGCATCG GCGCCTTCAG GCTTTATGCC CCGACCGGTT GCGAGAACTG CAACGGCGGC
TACAAGGGCC GGGTCGGCAT TTATGAAGTG GTTAAAATCA CTCCGGCCCT GCAGCGCATT
ATCATGGGGG ACGGCAACTC CATCGATATC GCCCGGCAGA TGCGCGCCGA GGGTTTCAAC
GACTTGCGCG CATCGGCCCT GTGGAAAGCA ATGCAGGGCG TCACCAGCCT GGAAGAAGTC
AACCGCGTCA CCAAGGACTA G
|
|---|
| Protein sequence | MHDDISLHGL ARQMVLAGLI DEKTVLQAQR QAQRNQTPLV TWLVQNKLVK SRGLAELAAE
QFGIALFDLG TLERENQPRD LLSEKLIRQH RALPLWRRGN RLFVAISDPT NHEAIREIRF
GTGLNTEAIL VEDDRLGEAM EKYFEGADTA LDDLADAGLD GLDIEAGDRH DEALNPAGDA
EDAPVVRFIN KILLDAIRRG SSDLHFEPYE KSHRVRFRTD GILHEVARPP VRSAPKIAAR
LKVMAGLDIS ERRKPQDGRI RMKLPKGKAI DFRVNTLPTL WGEKVVMRIL DPSSAQMGID
ALGYEESQKA LYLEALSQPQ GMILVTGPTG SGKTVSLYTG LNILNTAEVN ISTVEDPVEI
NLEGINQVNV NPRQGMDFSQ ALRAFLRQDP DIIMVGEIRD LETAEIAIKA AQTGHMVMST
LHTNSAAETL TRLRNMGVPS FNIATSVNLI IAQRLARKLC ACKQAVDIPH ETLLAEGFPE
ERIGAFRLYA PTGCENCNGG YKGRVGIYEV VKITPALQRI IMGDGNSIDI ARQMRAEGFN
DLRASALWKA MQGVTSLEEV NRVTKD
|
|---|
| |