| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_11600 |
|---|
| Symbol | |
|---|
| ID | 7760102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 1113129 |
|---|
| End bp | 1114889 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643804062 |
|---|
| Product | intracellular signalling protein with diguanylate cyclase and phosphodiesterase activities |
|---|
| Protein accession | YP_002798364 |
|---|
| Protein GI | 226943291 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.631303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAGC CGCCCCCCTC CCCCCAGCCG TCCGCCGAAC AGTTGGAACT GCTCGCCGTT
CTCGAACACG CCATGGCCAT CGCCGAATTC GCGCCGAACG GCCGCGTCCT GCGCGTCAAC
GACAAGTACC GGCAGATCTT CGGCTACAGC GAGCAATCCA TCGGCCAGCG CCGTCACCAG
CAACTCTGCG CGCCCGACCC GACCAACCGG CACGATTTCG ACGGTCTGTG GGCCGGACTG
GAAATGGGCC GCCCGGCGAA CGGCCGCTAC CCCTACGCGA GCGCCGACGG CCGATGTCTG
TGGCTGGAGT CGACCTACGT CCCCATTCGC GACGACGCCG GACGCCTGAA GCGCATCGTC
CAGATCGCCA TCGACGTCAG CGTCCAGACC GAACGCGAGG AAGTCGCACG GCAGCGCTGC
CGCCAACTGA TGCTGGAGCG CGAGGAAAGT CACGACCGGA TTCGCCAACT GGCCTTCTAC
GACCCCCTCA CCGACCTGCC CAATCGAGGC CTGCTGCTGA TCCAGGCCGA CCAGGCGATC
GCCCGGGCCA GGCGCGAGCG CACGGCCTTG AACGTCCTGT TCTTCGACCT GGACCGTTTC
AAGCTGATCA ACGACACCCT CGGCCATCCG GCCGGCGACC TCATGCTGCG CACCATCGCC
CAGCGCCTGC GCAGCGAACT GCGGACCACC GACATCGTCG GCCGCCTGGC CGGCGACGAA
TTCGTCGTGG TGCTCGCCGA CTGCGATCTC CGGCAGACGA CCGAAACCAT CCGGCGCATC
CAGAAGCAGT TGTCGGCATC CTGCCAGATC GCCGGAGCGA CCCTCGCCCC CTCGGCCAGC
ATCGGTATCA GCCGCTTTCC CGACGACGGC GAGGACATGG AAACCCTGCT GTACTACGCC
GACCTCGCCA TGTATCAGGC CAAAAGCAAA GGACGCGGCC AGTTCAGCTT CTTCAGCGAG
GAGATGAACC GTCAGGCCCA GGAGCGCCGG ACGCTCGAGA CGGACCTGCG CGAAGCGCTG
CGGCGGCGGC AGTTGCAGCT CCACTACCAG CCGCAGATTG ACCTCAGCAG CGGCCGGCTG
TGCGGCATCG AAGCCCTGGC CCGCTGGTTC CACCCGCAAC TCGGCAACAT TCCGCCGAGC
CGCTTCGTTC CGCTGGCGGA GGAATGCGGG CTGGCCGGCG AGCTGGATCG CTGGGCGCTG
GAGGAAGCCT GCCGGCAACT CGCCGCCTGG CGCGAGGCCG GACTCGAACC GGTGACGGTC
TCGGTGAATC TGTCGCCGCT CAGCATCCAC GACACCGAAC TGCCCGCTCG GATCGCCGAC
ATCCTGCGCC GCCACGCCCT GGCGCCGGCC GCCTTGAACC TGGAAATCAC CCAGGAGGCG
CTGCACGGCG GCAACCCCGG CACGCTGAAG ACCCTGCATG CCGTTCAGGC CATGGGCATC
GGCCTGACCG TCGACGACTT CGGTACCGGC CAGTCCTGTC TCGGTTACCT GCGCCACCTG
CCGATCCGCG CCCTGAAACT GGACCGCAGC TTCGTCCGCG ACCTGGAGCA CGACGAGGCC
ACCCGCGCCC TGACCGAGGT GGCCATGCAC ATCGGCGACA GCCTGCGCAT CGCCGTGTTC
GCCGAGGGAG TGGAAAACGA GGAACAACGC CGGCTGCTCA CCAACCGGGG CTATCAGGTG
GTCCAGGGCT TCCTGCTCTC GCAGCCGCTG TCCGCCGACC AGTTGTCGGA GTGGCTGGCC
AGGCGCTGGC CCGACCGCTA G
|
|---|
| Protein sequence | MKQPPPSPQP SAEQLELLAV LEHAMAIAEF APNGRVLRVN DKYRQIFGYS EQSIGQRRHQ
QLCAPDPTNR HDFDGLWAGL EMGRPANGRY PYASADGRCL WLESTYVPIR DDAGRLKRIV
QIAIDVSVQT EREEVARQRC RQLMLEREES HDRIRQLAFY DPLTDLPNRG LLLIQADQAI
ARARRERTAL NVLFFDLDRF KLINDTLGHP AGDLMLRTIA QRLRSELRTT DIVGRLAGDE
FVVVLADCDL RQTTETIRRI QKQLSASCQI AGATLAPSAS IGISRFPDDG EDMETLLYYA
DLAMYQAKSK GRGQFSFFSE EMNRQAQERR TLETDLREAL RRRQLQLHYQ PQIDLSSGRL
CGIEALARWF HPQLGNIPPS RFVPLAEECG LAGELDRWAL EEACRQLAAW REAGLEPVTV
SVNLSPLSIH DTELPARIAD ILRRHALAPA ALNLEITQEA LHGGNPGTLK TLHAVQAMGI
GLTVDDFGTG QSCLGYLRHL PIRALKLDRS FVRDLEHDEA TRALTEVAMH IGDSLRIAVF
AEGVENEEQR RLLTNRGYQV VQGFLLSQPL SADQLSEWLA RRWPDR
|
|---|
| |