| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_03870 |
|---|
| Symbol | |
|---|
| ID | 7759347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 368247 |
|---|
| End bp | 368813 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643803311 |
|---|
| Product | RNA polymerase sigma factor, FecI family |
|---|
| Protein accession | YP_002797622 |
|---|
| Protein GI | 226942549 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.943844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGG ATCGCCTGCG TCGATCCGAT ACCGGTGCCC TGAAGAAGTC TGAGGAATGC
CCGCTCATGT CCACGGAGCG CGAACGCTTG CTGTCCGCTT TCATCGAGCA CCGCGATGCC
TTGCTGGGTT ATCTCCGCCA GCGCTTCGGC AGTCCCAGCC TGGCGGAAGA CCTGGTCCAG
GAAACCTGGC TGCGCCTTGC CAGGCATACG CCGGAGCGGG ATATCGTCAA TCCGCGTGCC
TACCTGTTCC GCATCGCCAC CAATCTGGGG ACCGATCACC TGCGGCACCA GAACATGGGG
GTCGAAATCC AGGCCGAAGA CGAGGAGATC GCCCAGGTGC CGGCCCAGGC CGTGGACCCG
GCGCGCGAGG TCCAGTCGCA CGACGACCTC GAACGCCTGC TGGAAATCAT CGACAACCTG
CCGCCGCGCT GCCGGGAAAT CTTCATTCTC TGCCGGGTCG AAGGGCTCAG CCACGCGCAG
ATCGCCGAGC GCCTGAACAT TTCCAAGAGC ACGGTCGTCT CGCAGATGGT CAAGGCCCTG
GCGCGGCTCG AGCAGGCGAT GGAATGA
|
|---|
| Protein sequence | MKTDRLRRSD TGALKKSEEC PLMSTERERL LSAFIEHRDA LLGYLRQRFG SPSLAEDLVQ
ETWLRLARHT PERDIVNPRA YLFRIATNLG TDHLRHQNMG VEIQAEDEEI AQVPAQAVDP
AREVQSHDDL ERLLEIIDNL PPRCREIFIL CRVEGLSHAQ IAERLNISKS TVVSQMVKAL
ARLEQAME
|
|---|
| |