| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_00920 |
|---|
| Symbol | |
|---|
| ID | 7759059 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 93967 |
|---|
| End bp | 95238 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643803018 |
|---|
| Product | OprD family outer membrane porin |
|---|
| Protein accession | YP_002797334 |
|---|
| Protein GI | 226942261 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.696381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAATAACC GGAATGACTC GTCGCTCTCC GGGTCACGCG CTTGCGCGCT GACCCTGGCT
TTCGCCGGGC TGTTTCCCGG CACGCCGGTC CTGGCCGGCT TCCTGGAGGA CAGCCAGGGC
ACCCTGACCC TGCGCAACTT CTACATCCAT CGCAATTTCG TCGAAGATGG CGCTACCCGA
AGCAAGGCCG AAGAGTGGAC CCAAAGCTTC ATCCTCGATC TCAGGTCCGG TTACACCGAA
GGCCCGATCG GCTTCGGCAT CGACATCCTC GGCCTCCGGT CGGTCAAGCT CGACGGCGGC
AAGGGCACCG GCGGCACCCA GCTTTTGCCC GTCGGCAAGG ACGGCAAGCC GGCCGACGAC
TTCGGCCGCC TGGCGGTGGC CGGCAAGCTG CGCTTCTCGA AGACCGAGGC GAAGCTCGGC
GAGTGGTCGC CGGCGCTGCC GATCCTGCGC TCCGACGACG GCCGCTCGCT GCCGCAGACC
TTCCAGGGCG GCATGTTCAC CGCCAAGGAG GTCCGCAACC TGACCCTCTA CGGCGGGCGC
TTTCGCGGCA ACAGCCCGCG CGACGACAGC AGCCTCGAAG ACATGAGCTG GGTCGGCAAC
GCCAGCGTCA CCTCCGACCG CTTCAGCTTC GCCGGCGCCG AATACGCCTT CAACGACAAC
CGCACCCAAA TCGGTGCCTG GTTCGGCCAA CTGGAGGACA TCTACAAGCA GCGCTACTTC
CAGGTGCTGC ACAGCCAGCC GCTGGGCAAG GACTGGACCC TGGGCGCCAA CCTCGGCTAC
TTCGACGGCG AGGAGGACGG CAGCGCCCAG GCCGGCGACC TGGACAACAG CCTGCTGACC
GGGATGTTCT CGCTCAAGCA TGGCGCGCAC GTCTTCTACC TGGGCCTGCA GCGGGTCGGC
GGCGACGACC GCTGGCTGCG GGTCAACGGC ACCAGCGGCG GCACGGCGGC CAACGACAGC
TACAACGGCA GCTTCGACAA CGCCCGCGAA CGCTCCTGGC AGGTCCGCTA CGACTGCAAC
TTCACCGCCC TGGGCATCCC CGGCCTGACC CTGATGACCC GCTACATCAA GGGCCACAAC
GTGCATGCGG GCGGTATCGA CGACGGCGAG GAATGGAACC GCGAGACCGA GCTGGCCTAC
GCGGTGCAGA GCGGCCCGCT GAAGAACCTG ACCCTGCGCT GGCGGAACTC GACGGTGCGT
CGCGACTGGG GCGCCGACAA CAAGTTCGAC GACAACCGGC TGATCGTCGG CTATCCGATG
TCGTTGTTCT GA
|
|---|
| Protein sequence | MNNRNDSSLS GSRACALTLA FAGLFPGTPV LAGFLEDSQG TLTLRNFYIH RNFVEDGATR
SKAEEWTQSF ILDLRSGYTE GPIGFGIDIL GLRSVKLDGG KGTGGTQLLP VGKDGKPADD
FGRLAVAGKL RFSKTEAKLG EWSPALPILR SDDGRSLPQT FQGGMFTAKE VRNLTLYGGR
FRGNSPRDDS SLEDMSWVGN ASVTSDRFSF AGAEYAFNDN RTQIGAWFGQ LEDIYKQRYF
QVLHSQPLGK DWTLGANLGY FDGEEDGSAQ AGDLDNSLLT GMFSLKHGAH VFYLGLQRVG
GDDRWLRVNG TSGGTAANDS YNGSFDNARE RSWQVRYDCN FTALGIPGLT LMTRYIKGHN
VHAGGIDDGE EWNRETELAY AVQSGPLKNL TLRWRNSTVR RDWGADNKFD DNRLIVGYPM
SLF
|
|---|
| |