| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_00180 |
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| Symbol | lysM |
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| ID | 7758986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Azotobacter vinelandii DJ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012560 |
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| Strand | + |
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| Start bp | 20470 |
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| End bp | 21495 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643802945 |
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| Product | peptidoglycan-binding LysM protein |
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| Protein accession | YP_002797261 |
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| Protein GI | 226942188 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0309659 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGAAAT CACTACTCGC CCTGCTGCTG GCGGCCTGCA GCGCTCCGGC GCAGGCCGAG
GTGCAGCTTC GCGCGGGTCA TCCGCAGAGC TACAGGGTCG TCCAGGGCGA TACCCTGTGG
GGCATCTCCG GCAAGTTCCT CCGTGCGCCC TGGCAGTGGC CGCAGCTCTG GCACGTCGAC
CCGCGGCTCG AGAATCCCCA CCTGATCTAC CCGGGCGACG TGCTGAACCT GGTCTACATC
GACGGTCAGC CGCGCCTGAC GCTCGATCGC GGCGCCAGCC GCGGCACCGT CAGGCTGTCG
CCGCGGGTCC GTCGCACGCC CACGGTCCAG GCCATCCCGA CCATTCCGCT GGAGAAGATC
GACAGCTTCC TGCTCGGCAA CCGCATCGTC GACGACGCCG CGCAGTTGCG GAAGGCGCCC
TACGTGGTCG CCGGCAATGC CGAGCGGGTG ATCAGCGGCG CTGGCGACCG GGTCTACGCG
CGCGGCGACT TTTCCGCCGG CGAGGCGGCC TACGGCATCT TTCGCCAGGG CAAGGCCTAC
GTCGACCCGG CGACCAGGGA AGTGCTCGGC ATCGACGCCG ACGACATCGG CACCGGCGAA
CTGGTCGCCG AGGAAGGCGG CCTCGCCACC CTGCTGCTCA GCCGCTCGAC CCAGGAAGTG
CGCATCGGCG ACCGCCTGCT CCCCAGCGAG GAGCGGGCCG TCGACTCCAC CTTCATGCCC
AGGGAGCCGA ACGTCCCGGT CGAGGGGGTG ATCCTCGACG TGCCGCGCGG CGTGACCCAG
GTCGGCAATT TCGCCGTGGT CACCCTGAAC AAGGGCAGTC GGGACGGGCT GGCCGAGGGC
GACGTGCTGG CGGTGTACAA GACCGGCGAA ACCGTGCGCG ACCGCATCGG CGGCGAGCCG
GTGAAGATTC CCGATGAGCG TTCCGGCCTG CTGATGGTGT TCCGCACCTA CGCGCGGCTC
AGCTACGGCC TGATCCTCAG TGCCAGTCGC CAACTGGCGG TGATGGACAA GGTGCGCAAC
CCGTAA
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| Protein sequence | MRKSLLALLL AACSAPAQAE VQLRAGHPQS YRVVQGDTLW GISGKFLRAP WQWPQLWHVD
PRLENPHLIY PGDVLNLVYI DGQPRLTLDR GASRGTVRLS PRVRRTPTVQ AIPTIPLEKI
DSFLLGNRIV DDAAQLRKAP YVVAGNAERV ISGAGDRVYA RGDFSAGEAA YGIFRQGKAY
VDPATREVLG IDADDIGTGE LVAEEGGLAT LLLSRSTQEV RIGDRLLPSE ERAVDSTFMP
REPNVPVEGV ILDVPRGVTQ VGNFAVVTLN KGSRDGLAEG DVLAVYKTGE TVRDRIGGEP
VKIPDERSGL LMVFRTYARL SYGLILSASR QLAVMDKVRN P
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