| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_00170 |
|---|
| Symbol | def |
|---|
| ID | 7758985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 19812 |
|---|
| End bp | 20318 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643802944 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_002797260 |
|---|
| Protein GI | 226942187 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.221595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATAC TGACCATCCT CGAATTTCCC GATCCGCGCC TGCGCACCAT CGCCAAGCCC
ATCGAAACGG TGGACGACGG CATTCGCCGG TTGATCGACG ACATGTTCGA GACCATGTAC
GCCGCGCCCG GCATCGGCCT GGCGGCGACC CAGGTGAACG TGCACAAGCG CCTGGTGGTG
ATGGACCTGT CCGAGGACAA GAACGAGCCG CGGGTATTCA TCAACCCGGA GTTCGAAGCG
CTCACCGAGG AGCTGGAGCC CTACCAGGAG GGCTGCCTGT CGGTCCCCGG CTTCTACGAG
AACGTCGACC GCCCGCAGAA GGTCCGCATC CGCGCCCTGG ACCGCGACGG ACAGCCCTTC
GAACTGGTCG CCGAGGGCCT GCTGGCGGTG TGCATCCAGC ACGAATGCGA TCATCTGAAC
GGCAAGCTGT TCGTCGACTA TCTGTCGACG CTCAAACGCG ACCGCATCCG CAAGAAGCTG
GAGAAACAGC ATCGCCAGCA CGGCTGA
|
|---|
| Protein sequence | MAILTILEFP DPRLRTIAKP IETVDDGIRR LIDDMFETMY AAPGIGLAAT QVNVHKRLVV
MDLSEDKNEP RVFINPEFEA LTEELEPYQE GCLSVPGFYE NVDRPQKVRI RALDRDGQPF
ELVAEGLLAV CIQHECDHLN GKLFVDYLST LKRDRIRKKL EKQHRQHG
|
|---|
| |