Gene Avi_9819 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_9819 
SymbolavhB1b 
ID7379961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011986 
Strand- 
Start bp18233 
End bp19321 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content56% 
IMG OID643648250 
Producttype IV system transglycosylase 
Protein accessionYP_002546487 
Protein GI222102346 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGAAAA GTCCCACTCT GGTGCTGCTT GCTACAGCCA TGTCGATTGG CGCTCCAAGC 
GCAGCCTTTA CGCAGGTTCC AATCACCGAC GCCGCACTAA CGGCGGACGA CACGGTGAGG 
GAGAAAACAA CCGACGACAT CAAGGAAACA GACAAGAAAC GCCATACTGT CAGCACCAGC 
GTCACTTGCT CGATGTACAA AAAAGGCAAG GGAGGCGACG CGCCGTCTGC CGCGCAAGCT 
AATCCGGAGA TCGTCGGCCT CGTAAAGCGC GTTGCCCAGG AAGAGGGCGT AGACGAAACG 
CTGTTCATGT CTCTTGTCTA TCAAGAGAGC CGCTTCAACC CCTGCGCAAA ATCACCGGTA 
GGCGCGACGG GTCTATCGCA GCTTATGCCA GGAACCGCAA AGGACCTCGG CGTTGACCCA 
AACAACATTG AAGACAACCT TCGGGGCGGC GCGCGGTATC TCAAGCAACA GCTGAAGCGT 
TTCAACGGGA ATACGAACCT CGCTCTGGCC GCTTACAATG CTGGCCCTGG CAACGTGCAG 
AAGTATGGCG GCATCCCACC ATTCAAAGAA ACCCAAGGCT ATGTCGCGAG CATCACGAAA 
CAATGGATGC CGCAGTTTGG CGGGTCGGAT ACCTCAAACA TTCCGATGAA CTATGGAGGA 
GGCAGCACAG CCTTCTCGGG TGCTCGTGAC AGCTCGATGA ACGCTATGGC GACGAGCCAG 
TCCATCACGG AAAGCAGTGG CAATGTCAGT TCGTGGTTGC AGCAGCTCGG GCAGATGCAG 
ACGGGCACGA TCCAAGACAG CTGGGACCAG AACTCAGGGG CTCGAAACGC GAATCTCGAA 
ATGATGAATC AGGTCATTCG TCTTGGAGCG ACAATGGCTG AACTCATGAA CTCGAAGAAC 
GCGCTGGATC TCGGTGAAAG ATCCGGCTCG TCTCGCACGA GCTCGGTGAA GAAAAACGAC 
GATAAAGACC CCGAAACGGT GAAGCTCTGT GACCCGGCGC TGAACGTGGA GTGGAACGAG 
AAGGAACAAG CTTGCGTCCA GAAGAGGGAA CGGGCGTCCG AAATGAAACT GATGTTGAGT 
ACACAATAA
 
Protein sequence
MRKSPTLVLL ATAMSIGAPS AAFTQVPITD AALTADDTVR EKTTDDIKET DKKRHTVSTS 
VTCSMYKKGK GGDAPSAAQA NPEIVGLVKR VAQEEGVDET LFMSLVYQES RFNPCAKSPV 
GATGLSQLMP GTAKDLGVDP NNIEDNLRGG ARYLKQQLKR FNGNTNLALA AYNAGPGNVQ 
KYGGIPPFKE TQGYVASITK QWMPQFGGSD TSNIPMNYGG GSTAFSGARD SSMNAMATSQ 
SITESSGNVS SWLQQLGQMQ TGTIQDSWDQ NSGARNANLE MMNQVIRLGA TMAELMNSKN 
ALDLGERSGS SRTSSVKKND DKDPETVKLC DPALNVEWNE KEQACVQKRE RASEMKLMLS 
TQ