Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9816 |
Symbol | avhB6 |
ID | 7379958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011986 |
Strand | - |
Start bp | 16261 |
End bp | 17289 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643648247 |
Product | type IV secretion protein AvhB6 |
Protein accession | YP_002546484 |
Protein GI | 222102343 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGGATT TCCTCGGTGG GCTTTTGGAT CGGATCGAAC AGACGGGCGC TAGCTTTACG CAAAGCGCCT ATGGGGTTGT TGCGAGCGAA GTAACGCCGC TTCTAACCGT GCTTTTGATT GCCTACGTCG CCTATTACGG TCTTCAACTG ATCATGGGAA CTGCGCGTGT CAGCGTTGGG GAGGTGATCA GCCGCGTAGT CAGAATGACG CTGATCGTTG CTTTCATAAA CTCATGGGGT AACTTCAACA CGTTCTTCTA CGCCTGGCTG AGCGATACAC CGGAAGACGT GGGACGGGCA ATTCTCGCGG TCAGCAATAC AGGTATCACA GAGCCGACAA ACGGCCTTTC GATGATCTGG GAAACGGCCA ACAAGGCGGC GGGGGCCTTT GCTGAACAGG CCGGTTATTT TTCTGTTCTT CCGGCTATGG TCGGTTTTCT GATCATGTTT GGCGTCGGCG TGTTTATCGC CGTCGCTCTT GCGATCCTTT TGCTTGCGAA GGTCATGATG TGGGTGCTGC TAGGAACCGC CCCCATTTTC ATCGCATGTT TGTTGTTTCA ACCTACGCGA AGCTACGGAA TGGCATGGTT CCAAAGTGTG CTGATGTACG CGATTATTCC GTTGTTCGTT TACGTGGTTG CTGCGTTCTT GATCTCCGCA ATGGATCCAG AGTTGACGAA AGTCGCTGCA GCGGCCGATC AACGCAGGCT TCAACTCGAT GATGTTGCAG CTTTCCTTCT TTTGTGTGCC GCCGGCGCCT TCGTGCTTTT CAACATACAG ACACTTGCTC AGGGGATTAC GGGGGGTGTC GCAGCCGGGA TCGGCCAAGT GGCGCGAACC GTCGGAGGCC TGACGGGCTT CAGTGCCCCC GCTGCTGCAC TCACAGGAGC GCGCAGTGTT TCCGGCGCAG CCGGTCGGAT CGGGATGGCT GCAAGGGAAC GTACCCATGC GGGAATGCGG GAAAATATTC GAAATGCAAG CGCGGACGCG ATGCAGAAAA GCATCAGCAG TAACAGCGTG CCACGTTAA
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Protein sequence | MEDFLGGLLD RIEQTGASFT QSAYGVVASE VTPLLTVLLI AYVAYYGLQL IMGTARVSVG EVISRVVRMT LIVAFINSWG NFNTFFYAWL SDTPEDVGRA ILAVSNTGIT EPTNGLSMIW ETANKAAGAF AEQAGYFSVL PAMVGFLIMF GVGVFIAVAL AILLLAKVMM WVLLGTAPIF IACLLFQPTR SYGMAWFQSV LMYAIIPLFV YVVAAFLISA MDPELTKVAA AADQRRLQLD DVAAFLLLCA AGAFVLFNIQ TLAQGITGGV AAGIGQVART VGGLTGFSAP AAALTGARSV SGAAGRIGMA ARERTHAGMR ENIRNASADA MQKSISSNSV PR
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