Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9810 |
Symbol | avhD4 |
ID | 7379953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011986 |
Strand | - |
Start bp | 10420 |
End bp | 12519 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643648242 |
Product | conjugative coupling protein |
Protein accession | YP_002546479 |
Protein GI | 222102338 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGAAGG GCTTCAAAGC CGTCTACCTA GCGTTTTGCC TCGCGGTTGC CTTTGCGGCC TGGATGCTTG GATATGGCGC TGGCCTTCAC CTTTTTTACG GCGATGGCAG GATCCTCGAT ACAACGATAC GAAGCAATCC TTTCGCGCCA ATCCAACAGT TCTGGGCTTA CAGCGATAAT CCTACCCTGC AGAAGGTCGC CCTGGGGTCA TTGGTGCCTG CCTTCGTGAT CGCCGCAATT ACTGCATATC TCGGCCTTAG GCCAGTCACG AGCCCATTAG GGGACGCCGC GTTTCAGGAC ATCGCGGGTT TGCGGATGGG GAAATGGTTC GGCAAGAAGG GGCATATTTT CGGTGGTTTT GGAGGCAAGG TCCTCCGGGC GCAGGACGAT CGCCATCACC TGATCATCGG GCCGACAAGG TCCGGTAAAG GTGCCGGTTA CGTCATTCCG AATGCTCTCA TGCATGAAGG CTCGATGATC GTTACCGACT TGAAGGGCGA GGTCTTCAGG GCGACGGCCG GCTATCGGAA GAAGAATGGC AGCCAGGTCT TCATTTTCGC GCCGGGGTCG GAGCGCACGA ACAGCTACAA TCCGCTCGAT TTTGTGAGAC CAGAACGGGG CAATCGAACA ACCGACATTC AAAATATCGC CAGCATTCTT GTCCCGGAGA ACACGGAGTC GGAAAACTCG GTATGGCAAG CGATCGCGCA AAACGTCATT GCAGGCGCAA TAAGCTACAT GCTGGAAAGC CCATTCTACC ACGACCGCCG CAATCTTGGC GAAATCAACT CCTTCTTCAA CAGCGGCATG GATCTCCAGG CTTTGATGAA GCACATCAAA GAGAAAGAAC CTTACCTCTC GAAGTTTACA GTCGAGAGTT TCAACTCATA TATCTCATTG TCTGATCGAG CCGCTGCATC AGCCCTTCTT GATATCCAGA AGGCTATGCG ACCCTTCAAG AACGAACGCG TTGTCGCAGC AACGAACTTC ACCGACATGG ACCTTCGTGC CATGAAGCGG CGGCCTATAA CGATCTATCT CGCCCCGAAC ATCACTGACA TCACGCTTCT CAGGCCCTTG CTGACCCTGT TTGTCCAGCA GGTCATGAAC ATTCTCACGC TCGAACACGA TCCAAATTCT GTACCCGTCT ATTTCCTCCT CGATGAGTTT CGCCAGCTGA AACGCATGGA TGAGATCATG ACGAAGCTGC CCTATGTGGC CGGTTACAAC ATCAAGCTCG CTTTCATCAT TCAGGATCTT AAAAACCTCG ATGAGATATA TGGGGAGACC TCGCGGCACT CGCTCTTGGG GAATTGCGGC TATCAGTTGA TCCTTGGTGC AAATGATCAG GCCACGGCCG ACTATGCGTC ACGAGCTCTG GGCAAAAGGA CCATTCGCTA TTCCTCAGAG TCTCGCACCA TAGAAATAAT GGGACTTCCA CGGCGAACGA AGGTCGAGCA AATTCGCGAG CGAGACCTCA TGATGTCTCA GGAGGTCCGG CAAATGCCGG AAAATAGAAT GATCCTGCTG GTAGAGGGCC AGCGTCCGAT CTTTGCCGAA AAGCTTCGGT TCTTCAACAC GCAGCCATTC AAAGCTGCTG AAGCCTATGC CCAGGCTCAC ATCCCAAGCG TTCCGGATAT TGAGTACCTT CCATCGAAGC CGGTCCCGGC GACGACTGCA GAATATGAGA ATGCGGGAAA CGTAGCGCCG GTAGCTGAGC CTTCGGCTGC AGTCCAAACG AACATACCGG AAGCCGGTCC CGCTCAGAAA GAACCGGAAA AGCAGATTCC TGCAGCGGAG GCGCCGGAGC CAGCGCAAGC CACAGCGCCG GCCGCCCCTC CAGCGAAGCG CACCGTCAAC CCCGCGGCGT TGACCTCGAA AACCAAAGCC ACGCCCGCAG CCCGGCCGAA AGCCCCGAAG CGCAATAGCT CAACGTCAGA TGACATCGCA CGGCGAAAGG AAATAGAAGC GCTGCAATCT CTTGCAGTAC AAAGGCTTCG CGAACAGGTC GAGAAAGCCA GCGCCGGAAA GAACCCGACG AAGCGGAAAA ACATCATGGA CGTTTTCGCT GCAACCGTTC CAGATCCAGA GACAGCCTGA
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Protein sequence | MTKGFKAVYL AFCLAVAFAA WMLGYGAGLH LFYGDGRILD TTIRSNPFAP IQQFWAYSDN PTLQKVALGS LVPAFVIAAI TAYLGLRPVT SPLGDAAFQD IAGLRMGKWF GKKGHIFGGF GGKVLRAQDD RHHLIIGPTR SGKGAGYVIP NALMHEGSMI VTDLKGEVFR ATAGYRKKNG SQVFIFAPGS ERTNSYNPLD FVRPERGNRT TDIQNIASIL VPENTESENS VWQAIAQNVI AGAISYMLES PFYHDRRNLG EINSFFNSGM DLQALMKHIK EKEPYLSKFT VESFNSYISL SDRAAASALL DIQKAMRPFK NERVVAATNF TDMDLRAMKR RPITIYLAPN ITDITLLRPL LTLFVQQVMN ILTLEHDPNS VPVYFLLDEF RQLKRMDEIM TKLPYVAGYN IKLAFIIQDL KNLDEIYGET SRHSLLGNCG YQLILGANDQ ATADYASRAL GKRTIRYSSE SRTIEIMGLP RRTKVEQIRE RDLMMSQEVR QMPENRMILL VEGQRPIFAE KLRFFNTQPF KAAEAYAQAH IPSVPDIEYL PSKPVPATTA EYENAGNVAP VAEPSAAVQT NIPEAGPAQK EPEKQIPAAE APEPAQATAP AAPPAKRTVN PAALTSKTKA TPAARPKAPK RNSSTSDDIA RRKEIEALQS LAVQRLREQV EKASAGKNPT KRKNIMDVFA ATVPDPETA
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