| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9265 |
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| Symbol | trbE |
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| ID | 7367862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011984 |
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| Strand | - |
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| Start bp | 206596 |
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| End bp | 209064 |
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| Gene Length | 2469 bp |
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| Protein Length | 822 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643644425 |
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| Product | conjugal transfer protein TrbE |
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| Protein accession | YP_002542722 |
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| Protein GI | 222083319 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.502143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCGCAC TAAAACTCTT CCGACACTCC GGCCCGTCAT TCGCCGATCT GGTTCCCTAT
GCCGGTCTCG TCGATAATGG CGTGATCCTG CTGAAGGACG GCTCACTGAT GGCCGGCTGG
TATTTTGCCG GCCCGGACAG CGAAAGCTCG ACGGACGCAG AACGAAATGA GGTCAGCCGG
CAGATCAACA TGATCCTGGC CCGGCTGGGT TCGGGCTGGA TCATCCAGGT CGAAGCCTTG
CGGGTTCCAA CGATCGACTA TCCGGCCGGC GACGCTTGCC ATTTCCCGGA TCCGGTCACG
CGTGCGATCG ATAGCGAGCG CCGGTACCAT TTCGAGAGGG AGAGCGGGCA TTTCGAGAGC
CGGCACGCGC TGATCCTCAC CTGGCAGCCG CCAGAACCGC GGCGGTCCGG GCTGACGCGC
TATGTCTATT CGGATACCGC GAGCCGATCG GCGAGATATG CCGACACGAC GCTCGATTCC
TTTCGTACTT CCATCCGCGA GGTCGAACAG TATCTCGCCA ATGTAGTTTC CATCCGCCGG
ATGGTGACGC GGGAAACCGA AGAGCGCGGG GCCTTCCGGA TCGCCCGCTA TGACGAGCTG
TTCCAGTTCA TCCGCTTCTG CATCACCGGC GAGAACCACG CGGTCCGCCT GCCCGATATC
CCGATGTATC TCGACTGGCT GGTCACGGCC CAGCTCCAGC ACGGTCTGAC CCCGACCGTC
GAAAACCGCT TCCTCGGTGT CGTCGCCATA GACGGACTGC CGGCGGAGAG CTGGCCGGGG
ATCCTGAATA GCCTCGACCT GATGCCGCTC ACCTATCGCT GGTCCTCGCG CTTCGTGTTT
CTCGACGAGC AGGATGCACG CCAGAAGCTC GAGCGCACCC GCAAGAAATG GCAGCAGAAG
GTGCGGCCTT TCTTCGACCA GCTTTTCCAG ACCCAGAGCC GCTCGGTCGA CCAGGACGCC
ATGATGATGG TCGCCGAGAC CGAGGACGCT ATCGCCGAGG CGGCGTCGCA GCTCGTCGCC
TATGGTTATT ACACGCCGGT CATCGTCCTG TTCGACGAAC AGCAACCGCG CCTTCAGGAA
AAGTGTGAGG CGATCCGTCG CCTCATCCAG GCGGAAGGGT TCGGCGCCCG GATCGAGACG
CTTAACGCGA CCGACGCCTT TCTCGGCAGC CTGCCGGGCG TCTCCTATGC CAATATCCGC
GAGCCGCTAG TCAACACGCG AAATCTCGCG GACCTCATTC CGTTGAACTC GGTCTGGTCG
GGAAGCCCCA TCGCACCGTG CCCGTTCTAT CCGCCGGGAT CGCCGCCGCT TATGCAGGTC
GCCAGCGGAT CGACGCCGTT CCGCCTGAAC CTGCATGTCG ACGATGTCGG GCATGCGCTG
GTCTTCGGTC CGACCGGCTC GGGAAAGTCG ACATTGCTAT CGCTGATTGC CGCGCAGTTC
CGACGCTATG CGAGCGCGCA GATCTTTGCC TTCGACAAGG GGCGGTCGAT GTTGCCGCTG
ACGCTCGCCA TAGGCGGCGA TCACTACGAG ATCGGCGGGG ACACGGCCGG GGAAGGGGAG
GGGGCTTCGC CGCGGCTGGC CTTCTGCCCG CTCGCAGAAC TCTCGAGCGA CGGCGACCGC
GCCTGGGCGG CCGAGTGGAT CGAGACGCTC GTCGCCCTGC AGGGCGTCAC GGTCACGCCC
GACTATCGCA ACGCCATCTC CAGGCAACTG GCGCTCATGG CGGAATCGCG CGGCCGCTCG
CTCTCGGACT TCGTCTCCGG AGTGCAGATG CGCGAGATCA AGGACGCCTT GCACCACTAC
ACCGTCGACG GGCCGATGGG TCAGTTGCTC GATGCCGAAG AGGACGGACT GGCGCTCGGC
GCCTTCCAGT GCTTCGAGGT TGAGGAGTTG ATGAACCTGG GCGAGCGCAA TCTCGTCCCG
GTCCTCACCT ATATGTTCCG GCGGGTCGAG AAACGACTGA CAGGCGCTCC AAGCCTGATC
ATCCTCGATG AAGCCTGGCT GATGCTTGGC CATCCGACTT TCCGCGACAA GATCAGGGAA
TGGCTGAAGG TGCTGCGCAA GGCGAATTGC GCCGTCGTGC TTGCGACCCA GTCGATCTCC
GACGCCGAGC GCTCGGGAAT CATCGACGTG CTCAAGGAGA GCTGCCCGAC GAAAATATGC
CTGCCCAACG GCGCGGCCCG CGAGCCGGGG ACGCGCGAGT TCTACGAGCG CATCGGCTTC
AATGAGCGGC AGATCGAGAT CGTCGCGACT GCGCTCCCGA AGCGCGAATA CTACGTCGCC
TCACCCGAAG GCCGCCGACT GTTCGATATG TCACTCGGGC CCATTGCCCT GTCTTTCGTC
GGCGCGTCCG GCAAGGAGGA TCTGAAGCGC ATCCGCGCCC TTCATTCCAA ATACGGGGCG
GATTGGCCCA AGCACTGGCT CCAGCAAAGG GGGATCGCCC ATGCCGATAC ACTTTTCCCG
GCCGATTAA
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| Protein sequence | MVALKLFRHS GPSFADLVPY AGLVDNGVIL LKDGSLMAGW YFAGPDSESS TDAERNEVSR
QINMILARLG SGWIIQVEAL RVPTIDYPAG DACHFPDPVT RAIDSERRYH FERESGHFES
RHALILTWQP PEPRRSGLTR YVYSDTASRS ARYADTTLDS FRTSIREVEQ YLANVVSIRR
MVTRETEERG AFRIARYDEL FQFIRFCITG ENHAVRLPDI PMYLDWLVTA QLQHGLTPTV
ENRFLGVVAI DGLPAESWPG ILNSLDLMPL TYRWSSRFVF LDEQDARQKL ERTRKKWQQK
VRPFFDQLFQ TQSRSVDQDA MMMVAETEDA IAEAASQLVA YGYYTPVIVL FDEQQPRLQE
KCEAIRRLIQ AEGFGARIET LNATDAFLGS LPGVSYANIR EPLVNTRNLA DLIPLNSVWS
GSPIAPCPFY PPGSPPLMQV ASGSTPFRLN LHVDDVGHAL VFGPTGSGKS TLLSLIAAQF
RRYASAQIFA FDKGRSMLPL TLAIGGDHYE IGGDTAGEGE GASPRLAFCP LAELSSDGDR
AWAAEWIETL VALQGVTVTP DYRNAISRQL ALMAESRGRS LSDFVSGVQM REIKDALHHY
TVDGPMGQLL DAEEDGLALG AFQCFEVEEL MNLGERNLVP VLTYMFRRVE KRLTGAPSLI
ILDEAWLMLG HPTFRDKIRE WLKVLRKANC AVVLATQSIS DAERSGIIDV LKESCPTKIC
LPNGAAREPG TREFYERIGF NERQIEIVAT ALPKREYYVA SPEGRRLFDM SLGPIALSFV
GASGKEDLKR IRALHSKYGA DWPKHWLQQR GIAHADTLFP AD
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