Gene Avi_9260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_9260 
SymboltrbF 
ID7367858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011984 
Strand- 
Start bp203730 
End bp204392 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content63% 
IMG OID643644421 
Productconjugal transfer protein TrbF 
Protein accessionYP_002542718 
Protein GI222083315 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3701] Type IV secretory pathway, TrbF components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.399754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGGAC GCACCCCGCC CGACAATCCC TATATCGCTG CGAGAACGGA ATGGAACGAG 
CGCTACGGCT CCTATGTCAA GGCGGCCGCG GCGTGGCGTC TGGTCGGCGT CACCGGGATG 
ACCATGGCGG TGATCGGCTT TTCCTACGCG CTCTTCCAGA GCACGCAGGT CAAGCTCGTC 
CCGTATATCG TGGAAGTGGA CAAGCTCGGT ACGGCCTCGA ACGCCGGATT TCCCCAGCAG 
ATCGAATATG CCGACCCGCG CGTGGTGCGC GCCACGCTCG GCAGTTTCGT TTCGAACTTC 
CGGTCGGTGA CGCCCGACGC TGTGGTGCAG AAACAATATA TCGACCGCAC CTATGCGCTG 
CTTCGGACCT CAGATCCTGC GACCGAGAAG GTCAACGCCT GGTTCCGCTC CTCTTCGCCC 
TTCGAGAAGG CAAAGAACGC CACCGTCGCC GTCGAGGTCA ACAACATCGT GGCGCTGTCG 
AACCAGTCCT ACCAGATCGA CTGGACGGAG TTCGAGCGCG ACCGCCGCGG CAAGGAGACC 
GCCACACGCC GGTTCCGCGG CATTGCCACC GTAACGCTGA CGCCACCGCA GGACGAGGGC 
GTCATCCGGC TTAACCCGAT CGGTCTCTAT CTCCGGGATC TCGACTGGAC CGCGCAGCTT 
TGA
 
Protein sequence
MAGRTPPDNP YIAARTEWNE RYGSYVKAAA AWRLVGVTGM TMAVIGFSYA LFQSTQVKLV 
PYIVEVDKLG TASNAGFPQQ IEYADPRVVR ATLGSFVSNF RSVTPDAVVQ KQYIDRTYAL 
LRTSDPATEK VNAWFRSSSP FEKAKNATVA VEVNNIVALS NQSYQIDWTE FERDRRGKET 
ATRRFRGIAT VTLTPPQDEG VIRLNPIGLY LRDLDWTAQL