Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_9240 |
Symbol | |
ID | 7367844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011984 |
Strand | - |
Start bp | 189540 |
End bp | 190220 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643644407 |
Product | ABC transporter membrane spanning protein |
Protein accession | YP_002542704 |
Protein GI | 222083301 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.341088 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGATTC TCACCAATCC CCAGTATCTT GGGGAGATCG CGCTTGGCCT AAAAATGACA GTCATACTCG CCGTCGCGAG CTGGCTGATC GCCATTGGGT CCGGGATACT GCTTGCGATC ATTCGCGTTT CTGCGCCTCG ATCGATCGAC GCCGCCGCCG CCGCCTGGAT CGAATATCAG CGCAATGTCC CGGTCATCGT GCACATCTTC GCGTGGTACT TCGGTGTTAG CACCATTTTC CCTCTGCCGG CACAGGACTG GTTCAATGCA AACAATGGTG ACGTGATCTT CGCCGCCGTA GCAATTGGCC TCTACTACGG AGCCTATATC TGCGAAGATA TCCGTAGTGG CTACCGCTCG ATTTCTCGCG GCCAGTATGA GGCCGCGAGA TCCATCGGCC TGAACTTCCG GCAGTCCTTG CATCACGTGA TGATGCCACA GGCAGTGAGG GCTTCCCTGC CAGCACTGAT CAGCCGTGCG ATCCTGCTCC TGAAATCGAC CAGCCTTGCG ATGGTGATCG GTGTCATGGA ACTTACCTAC CAGACAAAGG AAATCCAGAA CGAGACGTTC TTAACTTTCC AGGCGTTTTC GATCGCGACT ATTATCTACC TAGTCCTCTC GATGGCGGTC ATCCTGCTCG GCAAGGTCAC CGAGCATTAC ATGGAAGTGG GGACTGCCTG A
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Protein sequence | MEILTNPQYL GEIALGLKMT VILAVASWLI AIGSGILLAI IRVSAPRSID AAAAAWIEYQ RNVPVIVHIF AWYFGVSTIF PLPAQDWFNA NNGDVIFAAV AIGLYYGAYI CEDIRSGYRS ISRGQYEAAR SIGLNFRQSL HHVMMPQAVR ASLPALISRA ILLLKSTSLA MVIGVMELTY QTKEIQNETF LTFQAFSIAT IIYLVLSMAV ILLGKVTEHY MEVGTA
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