| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_9140 |
|---|
| Symbol | |
|---|
| ID | 7367691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011984 |
|---|
| Strand | - |
|---|
| Start bp | 104195 |
|---|
| End bp | 105196 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643644336 |
|---|
| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
|---|
| Protein accession | YP_002542633 |
|---|
| Protein GI | 222083230 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTC CGCTGATCGA GGCCTCGTGC CTGGAAAAAA CCTTTGGATC GTCGCAGTTC
CTGTCCGCCA AAAAACCGGT CAGAGCTGTC TCCGATGTGT CCATCACCAT CAACCGCGGC
GAGGCAGTCG GGCTGGTCGG CGAAAGTGGC TCCGGCAAAA GCACAATCGG ACGGCTTCTC
CTCAATCTCA TCCCTCTGAG CGGTGGCTCG GTGACCTTCG ACGGTGAGAC GCTCGACGGC
ATGAACAAGA CTGATTTGCG CCGACTTCGT CAACGGATGC AGATTATTTT CCAGGATCCT
TATTCGAGCT TTGATCCAAG GCGTCGGATC GGTTCGCAAA TCAACGATGC CTTGAAGCTC
CATACCCGCA AGAGCAGAAG CGAACGCAAA AGCCGGATTG CGGATCTCCT AGTTCAGGTC
GGACTTCGTC CGGAACACGC CCAAAGGTTT CCGCACGAGT TCAGCGGCGG CCAACGTCAA
CGCATCGGGA TTGCCCGCGC CCTTGCGACG GAGCCAGACT TCATTGTCGC CGACGAGCCG
GTTTCCGCCC TTGATGTATC CGTTCAGGCT CAAATTCTCG CACTGCTTAT TGAGTTGCGG
GAGACGTTGA ACCTGACCCT TCTGTTCATC AGCCATGACC TACTGGTCGT GAAGCACCTG
TGCAACCGGG TGGTTGTACT TTATCTTGGT CGGATCATGG AGGAAGGTTC GGTGGAGGCC
GTGTTCTCCA ACCCCCGTCA CCCGTATACA GCCGTTTTGC TGAGCGCCAT CCCTAGGGTT
GATGCGGATG TCAGGCCGGT CCTGAGGATC GCGCTTCGTG GCGATCCACC CAGCCCTGCG
AATCCTCCAA GTGGCTGCGT GTTTCGCACA CGTTGCCCTT TCGCGATTGA GGCTTGTTCG
TTGGCGCGTC CGGCGCTCAG GGAAGTGAGC GGTGGTCACC GGATCGCCTG CATACGGGAC
GATATCTCAT TTTCAGGATT ACGCGCCGGC ACTCAAATGT AA
|
|---|
| Protein sequence | MTIPLIEASC LEKTFGSSQF LSAKKPVRAV SDVSITINRG EAVGLVGESG SGKSTIGRLL
LNLIPLSGGS VTFDGETLDG MNKTDLRRLR QRMQIIFQDP YSSFDPRRRI GSQINDALKL
HTRKSRSERK SRIADLLVQV GLRPEHAQRF PHEFSGGQRQ RIGIARALAT EPDFIVADEP
VSALDVSVQA QILALLIELR ETLNLTLLFI SHDLLVVKHL CNRVVVLYLG RIMEEGSVEA
VFSNPRHPYT AVLLSAIPRV DADVRPVLRI ALRGDPPSPA NPPSGCVFRT RCPFAIEACS
LARPALREVS GGHRIACIRD DISFSGLRAG TQM
|
|---|
| |