| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8328 |
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| Symbol | trbL |
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| ID | 7365276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 251561 |
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| End bp | 252589 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643641881 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_002540178 |
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| Protein GI | 222080314 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.169501 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCG CGCGATCGTT GTTCTGGATC CTCGCCGGCA TCGAGGTCGG AATCGCCGCC
GTGTGGCTGG CGATCAACGC CGCCTCGCTC GACAGCTGGT TCGCCGAACT TGTCAAACGC
ATCATGTTCA TCGGCCTGTT CGCCTTCATC CTCGACAGGG GCCCGGAGTT CGCCAAGGCC
GTGGTCGACA GCCTCTATCA GATCGGTGCG GGCGGCGGTT CGGCCTCGCC TGCCAATATC
TTTGACGCTG GTATTCGCGT TGCGACTAAA ATGTCTGAAC AGGCCAAGTT CGGACTGTGG
GAAGACAATG CGCTGGCCAT CGCTGCCGTC TTCGCCATGG TCGTGGTCGT CGTATCATTC
TCGCTGGTGG CCGCAATCTT CGTGGCCGTG ATGGTCGAGA TGTATGTCGG CCTGCTCGCC
GGCATGATCA TGCTCGGGCT CGGCGGCTCC TCTCATACCA AGGACTTTGC CGTCAAATAT
CTGGTTTACG CCTTCTCCGT CGGCATGAAG CTGATGGCGC TGGTGATGAT CGCCAAAATC
GGCTCCGACA TCCTGCTCGG CCTTGCCGAA GCGCCGACGG CGACATCTGA ACAGTTCATC
ACCACCTTGG CGATCGCCGG CATCTCGGTC GTGGTCTTCG TCATCGCCAT GTATGTACCG
CCGATACTGC AGGGTGTGGT CCAGGGCGCA TCGGTCGGCG GTGGCATGGA GGCCATCCGC
CACGGAGGAC AGGCAGCCTC CGCTGCCCTT GGTGCCGGCT TCCTCACGAT CGGTGCTGCA
AATCGGGGCT TTGAGGCAGC AGGTGCCGCG AGGGCAGGGG GAGCGTCATT GGCAGGTGCC
GCCATGCGCG GGTTGGAAGC CGGCGTTGGC GGAGCGGCCG GCGCAGTTGG CTCGGCTGCC
AAGGACAAGG CTATCGGCTC GCCCGGTGCC TATGCCGGTT CGATGCTCGG CCTCGCCAAC
GCCAAGCTCG ACCAGCAATC CGGCCGGGCC GGTACAAAGC CGCCACCGCC GATCAATGAC
AAGAAGTAA
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| Protein sequence | MNAARSLFWI LAGIEVGIAA VWLAINAASL DSWFAELVKR IMFIGLFAFI LDRGPEFAKA
VVDSLYQIGA GGGSASPANI FDAGIRVATK MSEQAKFGLW EDNALAIAAV FAMVVVVVSF
SLVAAIFVAV MVEMYVGLLA GMIMLGLGGS SHTKDFAVKY LVYAFSVGMK LMALVMIAKI
GSDILLGLAE APTATSEQFI TTLAIAGISV VVFVIAMYVP PILQGVVQGA SVGGGMEAIR
HGGQAASAAL GAGFLTIGAA NRGFEAAGAA RAGGASLAGA AMRGLEAGVG GAAGAVGSAA
KDKAIGSPGA YAGSMLGLAN AKLDQQSGRA GTKPPPPIND KK
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