Gene Avi_8183 details

Gene Information

• Locus tag: Avi_8183
• ID: 7365085
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011982
• Strand: +
• Start bp: 128400
• End bp: 130190
• Gene Length: 1791 bp
• Protein Length: 596 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643641787
• Product: ABC transporter nucleotide binding/ATPase protein
• Protein accession: YP_002540084
• Protein GI: 222080221
• COG category: [R] General function prediction only
• COG ID: [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase
• TIGRFAM ID: [TIGR02323] phosphonate C-P lyase system protein PhnK

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.474805
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGAGC ACGCTGTACT TTCAGTCAAA AATCTCAAGA TCTCATTCGG CAGCAAGCCG 
ATCGTCCACG ATCTCAGCTT CGATATTGCC GCCGGCTCGA CCCTGGCGGT TGTCGGTGAA 
TCCGGATCGG GAAAGAGCGT CACCTCACTG GCGATTATGG GCCTTCTGCC CGAAGGCACC 
GCCAAGGTGA GCGGGTCGAT CCGCCTTAAT GGCAAAGAAT TGCTCGATCT GCCTGAAGCA 
GAGATGCGCC AGATCAGGGG TGGCAAGATC AGCATGATCT TCCAGGAACC GATGACGTCA 
CTCAATCCTG TCCAGCGCGT CGGAGATCAA ATCGCCGAAG CCATCCGGAT TCACCGGGGA 
TTGAAGGGGC GGGGCCTTCG CGACGCGGTT CTGGAAATGC TTAAAAAGGT CGGTATCCCC 
GACCCGGAAC GCCGGATTGA CAACTATCCG CACATGTTCT CCGGCGGGAT GCGCCAGCGC 
GTGATGATTG CCATGGCTCT GGCTTGCGAT CCCGCATTGA TCATAGCCGA CGAGCCGACC 
ACCGCACTTG ACGTTACCGT TCAGGCGCAG ATCCTTCAAC TTTTGAAAGA TCTACAGCAG 
GACACGAAGA CCGCCGTCTT GTTCATCACG CATGATATGG GCGTTGTCGC CGAAGTCGCC 
GATCAGGTCC TGGTCATGCG AGGCGGTCAC CAAATCGAAG CAGATTCGGT CAACAAAATC 
TTCACCGAGC CGGAAAGCGA ATATACCCGG ATTCTGATCG AAGCAGCACC CTCGATTGCG 
GGTAAAATCG ATATCGAAAA TGCGGCAGCG TCAGAACTCG ACGTCCTTCC GCTCAACTGC 
AAAGGTGACA AGCCCCTTCT TGAGGTGCGT GATCTCTCGG TTAGATTTGT CCATACCGGC 
GGGTTGCTTG GCCGCAGACT GGGCCATGTC CATGCTGTGG AAGGTGTCTC GTTCGCGATC 
GGTAAGGGTG AGACGCTCGG CCTTGTCGGG GAGTCGGGCT CCGGGAAGTC AACGATCGGC 
AAGGCTATCA TCGATCTCGT ATCGCGGCAT GGCGGCACGA TCACGGTCGA CGGCAACGTG 
ATCGACTATT CCAATCCTAA AAGTCTGGCG CGCTTGCGCC GTGACGTCCA GATGATCTTC 
CAGGATCCAT TTGGGTCGCT CGACAGTCGA CAGACTATTG GCTCGGCGAT TATCGAGCCG 
ATGAAAGTAC ACGGGATTGC AACCGGCAAA GCGCTGACCG AGAAAATGGA GTGGCTGCTC 
GACAAAGTCG GTATCTCTCC CGATCGCGCC AAGAGCCTGC CCCATGAATT CTCCGGCGGC 
CAGCGCCAGC GCATCTGCAT CGCGCGGGCG CTCGCAATGG CACCGAAGCT GATTATCGCC 
GACGAAGCTG TTTCTGCTCT CGATGTTGCC GTCAAAGCGC AGATCATCGA GCTTATGATG 
AACCTGCAGA AGGAATTCGA CATTTCGTAT CTGTTCATCA GCCACGACAT GGCCGCCGTA 
GAGAAAATCT GTGATCGGGT TGCCGTTATG TACTTTGGTG AACTGGTTGA AATCGGCAGC 
AGGGATGACG TAATCGGGCG CCCTGGCCAT GCCTATACCC AGCGCTTGCT TTCCGCCATT 
CCGATTACCC ATCCGGATCA ACGGCTGGAT CGACCGGCGG CAAAGCGCGA GGCGCCGCCA 
CCACGCAGCC CGATGAAGCC CATCGGTTTC GCACCGGAAC CAGCGCTTTG GAATATGAAA 
AGCGACGGGC ATTTCGTCCG CCGCACCGCG CCATTGCTCA GCCCTCGGTG A 

 

Protein sequence

MSEHAVLSVK NLKISFGSKP IVHDLSFDIA AGSTLAVVGE SGSGKSVTSL AIMGLLPEGT 
AKVSGSIRLN GKELLDLPEA EMRQIRGGKI SMIFQEPMTS LNPVQRVGDQ IAEAIRIHRG 
LKGRGLRDAV LEMLKKVGIP DPERRIDNYP HMFSGGMRQR VMIAMALACD PALIIADEPT 
TALDVTVQAQ ILQLLKDLQQ DTKTAVLFIT HDMGVVAEVA DQVLVMRGGH QIEADSVNKI 
FTEPESEYTR ILIEAAPSIA GKIDIENAAA SELDVLPLNC KGDKPLLEVR DLSVRFVHTG 
GLLGRRLGHV HAVEGVSFAI GKGETLGLVG ESGSGKSTIG KAIIDLVSRH GGTITVDGNV 
IDYSNPKSLA RLRRDVQMIF QDPFGSLDSR QTIGSAIIEP MKVHGIATGK ALTEKMEWLL 
DKVGISPDRA KSLPHEFSGG QRQRICIARA LAMAPKLIIA DEAVSALDVA VKAQIIELMM 
NLQKEFDISY LFISHDMAAV EKICDRVAVM YFGELVEIGS RDDVIGRPGH AYTQRLLSAI 
PITHPDQRLD RPAAKREAPP PRSPMKPIGF APEPALWNMK SDGHFVRRTA PLLSPR