Gene Avi_8172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8172 
SymbolafuC 
ID7365078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand
Start bp119141 
End bp120235 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content58% 
IMG OID643641780 
ProductABC transporter nucleotide binding/ATPase protein (iron) 
Protein accessionYP_002540077 
Protein GI222080214 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.170371 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGTG GTGCCGAACT CAGTCTCCAA GACCTCTCAA AGTCGTATGA CGATAAGAAG 
CTTGTGCTCA ACAAGCTGAA CATCACTGCT GCACCTGGCG AAATTGTCTC GCTCCTCGGA
CCGTCAGGCT GCGGCAAATC AACAGCTTTG AGGATTGTCG CAGGGTTGGT TGGAGCGACG
TCCGGCCGTG TGATGCTGGC CGGCAAGGAT GTGACATCCC TGCCGACCTA CAAACGAAAT
ATTGGTCTCG TCTTCCAGAA CTACGCCTTG TTCCCGCACA TGACGGTGCT GGACAATGTC
GCGTTCGGCC TGGAAATGCG AAACGTCAAC CGGAAGGAAG CCAGATCCAG GGCGGGCGAG
ATTCTGGAGA TGGTCAGGCT CGGAGCGCTC GGTCAACGCC GCCCGCGCCA GCTTTCCGGC
GGTCAGCAAC AGCGCGTCGC ACTGGCCCGC GCTCTGGTCA TCCACCCCGA TCTCCTCCTT
CTCGACGAGC CACTTTCCAA CCTCGACGCC AAGCTTCGCG AGCAAATGCA GGACGAAATT
CGTGACCTGC AGCAACGCCT GGGAACGACT GCCATCTTCG TCACGCACGA TCAGTCCGAA
GCGATGGCAA TCTCCGATCA CGTTGCCATC ATGAATGAAG GCGTGATCGT CCAGTACGGT
CGACCCACGG AGATCTACGA GAACCCGGCA AGCAGTTTCG TCGCCAACTT CATCGGTCGC
GTGAACAGTA TCGACGGCAT CAGCAATGCG GATGGCGATG CGAGTCAGCA GATCAAGACA
GACACGGGGC TGTCCATCAA GCTTGCCAAG CCTTCGCTCA AGGGACCCGT TCAGTTTCTG
ATCAGGCCAA GTTCGATCGA AGTCCTGCCG AGCTCAACCC CGAGCGAGGC TGGGCGAAAC
CGCGTCCCCG CTTCGGTCCG CAAGGTCACC TATGCAGGAG ATATCGTTTC AGTCGCTTGT
GATACCCAAG GGATCGCGAT GACAGCGGAA ATACCGGGCT CGTCTTCGGC CTGGCGCAGC
CTGGAACCCG GGCAACAGGT CACATTGGAC TGGCCGGTGG CCAGCGGCTT TGTCTTCGAA
CGGAAGGCGA ATTGA
 
Protein sequence
MKSGAELSLQ DLSKSYDDKK LVLNKLNITA APGEIVSLLG PSGCGKSTAL RIVAGLVGAT 
SGRVMLAGKD VTSLPTYKRN IGLVFQNYAL FPHMTVLDNV AFGLEMRNVN RKEARSRAGE
ILEMVRLGAL GQRRPRQLSG GQQQRVALAR ALVIHPDLLL LDEPLSNLDA KLREQMQDEI
RDLQQRLGTT AIFVTHDQSE AMAISDHVAI MNEGVIVQYG RPTEIYENPA SSFVANFIGR
VNSIDGISNA DGDASQQIKT DTGLSIKLAK PSLKGPVQFL IRPSSIEVLP SSTPSEAGRN
RVPASVRKVT YAGDIVSVAC DTQGIAMTAE IPGSSSAWRS LEPGQQVTLD WPVASGFVFE
RKAN