| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7643 |
|---|
| Symbol | |
|---|
| ID | 7380286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 577013 |
|---|
| End bp | 578740 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643641638 |
|---|
| Product | sensory methylation accepting chemotaxis protein |
|---|
| Protein accession | YP_002539935 |
|---|
| Protein GI | 222102896 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTGT TGTCAATTGT ATTCGGAAGC GACATCAAAG CTATTTTCGA TGCCATAAAT
CGGTCTCAAG GCGTCATTGA ATTCGACATC CAGGGCAATA TTCTTGATGC GAATGACAAT
TTCTGCAAGA CGCTTGGATA TGCAAAATCA GATATCATTG GCAAACACCA TCGGATCTTT
CTCGATCCTG AAGAGGTGAA GACTAAAGCC TATGCCGATT TCTGGGCAAA ACTCGTTTCC
GGCCAGTTCG ACCAGCGCCA ATATAAGCGG TTCACCAAAT CGGGCGACCC CATCTGGATC
GAAGCCTCTT ACAATCCGGT TTTTCGCGGG GGTAAGCCTT ACAAAATTGT AAAAATTGCC
ACGGACATTA CGGCGTCCAC AAACAAAGCT ATGGATGGCG ACGGCAAGAT GGAAGCGTTG
TTGCGTTCTC AGGCCGTTAT CGAGTTCACA CCGACTGGCC AGATTTTGAC TGCCAACGAG
AATTTCTGCA AGGCGATGAA CTACGACCTC AGCGAGATCA TTGGCAAAAA TCATTCGATG
TTTTGTGAAC AAGCTTACAT CGCGTCCCCC GATTACAAAG AGTTCTGGCG CAAGCTTGGA
GCAGATGAGT TCCAGAGCGA CGAGTTCTTG CGGATCGGGA AAGGTGGCAA GAAAGTCTAT
ATTCAGGCCA CTTATAACCC CATCACAGAT GAAAAGGGAA AGGTCGTCAA GGTTGTGAAA
TTCGCGATCG ATGTCACCGG CCGCGTCAAC GCCATTGCTG CGATTGGTGC AGGTCTTGAG
CGCTTGTCCG ACTGCAATAT CCGAATGACG ATTGATGAGC CGTTCATTCC AACCTTCGAG
CACTTGCGTA AAGACTTCAA CATGTCCATT GGCAAATTCC AGGAAACCCT GGCGCAGGTG
CTGGCGGAAA CGGCGGCGGT TTCCGCCAAT AGTCATGATA TGCTCAAGGG ATCGACCAGC
CTGGCAAAAC GCTCGGAGCA ACAGGCTGCC GCACTGGAGC AGACTTCTGC GGCATTGGAA
GAAATAACCG CGACGGTGAG AGAATCCAGT GCGCGTTCCA AAGATACTCG AAACTTGGTG
CGCGACGCTC GTCAGGCCGC AACCGAGTCC GTAAAGGTCG TTAACTTCAC CGTCGCCGCC
ATGAGCCGCA TCGAGGGCGC TTCGAAGGAA ATCAGTAATA TCATCACTGT TATCGATGAA
ATTGCCTTCC AGACCAACCT TTTAGCCCTG AATGCAGGCG TCGAAGCAGC CCGCGCTGGT
GAAAGTGGCA AGGGCTTTGC GGTCGTGGCC CAGGAGGTCC GTGAGTTGGC TCAACGCTCC
GCCAAGGCCG CCAAGGAAAT TTCGGAATTG ATCGCTAAAT CGACCAATGA AGTGAAGGAC
GGTGTACGTC TGGTCGGGGA AACCGGCAGT GCGCTGAACC GGATCGAGTC CTTCGTGCAA
TCTATCGATG TTAATATTGA AGCCATTTCC ACGGCAGCGT CGGAGCAATC CACTAGCCTC
ACGGAAATCA GCACTGCGGT CAACGCCTTA GACCAGATGA CACAACAGAA CGCGGGAATG
GTCAGCGGCA TGAATGCCAT CAGCGAAGCA CTTTCCAGTG GCGCGGCTAA ACTGAGCGAA
CTGGCAAACC GCTTCCAGCT CAACAGGCGC AGTGCCATCC GCGAGCCGGG AAGTTCCGCT
GCAATGCGTG ACAACGACAG GCGGGAAAGC AATCGCTCGG CGGCCTGA
|
|---|
| Protein sequence | MGLLSIVFGS DIKAIFDAIN RSQGVIEFDI QGNILDANDN FCKTLGYAKS DIIGKHHRIF
LDPEEVKTKA YADFWAKLVS GQFDQRQYKR FTKSGDPIWI EASYNPVFRG GKPYKIVKIA
TDITASTNKA MDGDGKMEAL LRSQAVIEFT PTGQILTANE NFCKAMNYDL SEIIGKNHSM
FCEQAYIASP DYKEFWRKLG ADEFQSDEFL RIGKGGKKVY IQATYNPITD EKGKVVKVVK
FAIDVTGRVN AIAAIGAGLE RLSDCNIRMT IDEPFIPTFE HLRKDFNMSI GKFQETLAQV
LAETAAVSAN SHDMLKGSTS LAKRSEQQAA ALEQTSAALE EITATVRESS ARSKDTRNLV
RDARQAATES VKVVNFTVAA MSRIEGASKE ISNIITVIDE IAFQTNLLAL NAGVEAARAG
ESGKGFAVVA QEVRELAQRS AKAAKEISEL IAKSTNEVKD GVRLVGETGS ALNRIESFVQ
SIDVNIEAIS TAASEQSTSL TEISTAVNAL DQMTQQNAGM VSGMNAISEA LSSGAAKLSE
LANRFQLNRR SAIREPGSSA AMRDNDRRES NRSAA
|
|---|
| |