| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7641 |
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| Symbol | |
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| ID | 7380285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 574970 |
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| End bp | 576937 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643641637 |
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| Product | hypothetical protein |
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| Protein accession | YP_002539934 |
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| Protein GI | 222102895 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGTTT TCAAATTCTC TAAACTCGTT CGTGAATTGC TGACTGTCCG ATCTGATAAT
CCCGATTTGC TAAAAGCCCA ATATCGCGCT TTCTCCAGCC AAATGCCGAT GATGTATTTC
ATCTTGCTGT CCAGCAGCTG GGCGTTGGCC ATCACGCATT TTCAGTCCTC GCCCTTGTAT
CTTACCGTCG GCATGCCGCT TCTGTTTACG TGTCTAGGCG GCCTACGAAT GGTATTCTGG
TTGCGAAACC GCAGTGTTGA GCCGACAGCT GAAATGGCCC ACGCCGCAAT GACCTGCGCA
AATCGTCTTG CCATTGTCAT TGCAATCACA TTTGCGGTTT GGTGTTACAT GTTGTTACCT
TATGGAGATG AATACGAGCG ATCTTACGTC TCTTTCTACA TGGCAATTAC CGTAATGTCT
TGCATATTCT GCTTGATGTA TCTGCGATCT GCGGCAGTAA TTGTTACTAT AATCGTCAGC
GTGTCATTTA TAATATTTTT CATTTCACTT GAAAAAATTA TTTGTATAGC CGTTGCGGTC
AATATCATAT TGGTTTGCGC AGGAATTATA TCGGTTTTGC TCACGAATTA CCGCAATTTC
GAGCAGATGG TCCTATCACA ACATAGGGCA GAAGCGTTGA GCAACGAAAA TTTACGACTG
GCCCACGTCG ATAGCCTAAC CGAGCTACCA AACCGACGAG CGTTTTTTTC GTATCTTGAA
TTCGAACTGA CGAAAGCGAG TACCGTTGGT TCCAGGGTCG CCCTTGGCCT TATCGACCTC
GACGGGTTCA AACCGATTAA CGACCTTTAC GGCCATTCGA CAGGTGATCG GCTTTTGGTT
GAAGTGGGAA AACGTCTGTT GGATCTTCCT GAGGGCCACA AAATCTTCCG GCTGGGCGGT
GATGAATTTG CGGTGATTGC GACGAATTCT CTAGACGATG AACAGTTCTT AAGCGCCGCG
AATGCACTGA TTGAGCGGCT TCATCACCCT TTCCATATGG CGGAGGCCAC CGTTCAGATT
TCTGCATCAA TGGGCATTGC AATCTATCCG GATCTCACAT TGACGCCAGA TAGATTGCTT
GATCAGGCTG ACTACGCCCT CTATCACGCA AAGAATACTC GACGTGGGAG TGCGGTATTG
TTTAACGCGT GCCATGAAAG ACAAATCAAT ATTAACGCCA GCATCGAACA AACACTCAAG
CAAGCTGACA TATCGCATGA AATGTCCGTC GTCTATCAGC CCATCATTGA TATCAGACAG
GGAAAGCCCG TTGGCTTCGA GGCGCTGGCC CGTTGGGAAA GCCCAACATT AGGCTGTGTA
TCGCCCGCCG AGTTTTTTCC TATTGCGGAG CGAGCCGGGA TCGTCGGTCT TTTAACGAGA
CCACTTCTTA GAAAGGCACT TGATGCCGCA AGCCAATGGG ATAGGGACCT CCGGCTATCG
TTCAATCTTT CTGCTTACGA TCTTAACTTG AGCGAAAGTG CAACGCTCTT GATTGATATC
ATCGAGAATG GGAAATTTGA CGCAGGTCGT ATTGATTTTG AAATTACCGA AACAGCATTC
ACACATGACT TCACACAGGT TAAGCGGTCC ATTGAAATGC TGCGGTCACG TGGCTGCGGA
ATTTCTCTTG ACGATTTTGG CATTGGTTAC TCGAGCCTCA CACGACTGCA CTCTCTTCCA
CTCACCAAGA TCAAGATTGA TCGCAGCTTT GTCGTAGGTC TGGACAAGAC ACCTGCAAGT
TATAAAATTG TTAAGTCCGT ACTCGCTCTC AGCCAAGATA TGGGATTGGA GTGTGTTGTT
GAAGGTATAG AAACACACGA CGAATTGGCG GCTCTACAGA AACTCGGCGG AATCCTCGTT
CAAGGTTATA TCTGTTCTCC GCCACTCCGA GAGTCAGACG TGGCGGAGTT CATTGCGCGA
ACGGCAGATA CCAGTGCTTT TCAGGCGTCC GGCGTGTTCA ATTTTTGA
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| Protein sequence | MPVFKFSKLV RELLTVRSDN PDLLKAQYRA FSSQMPMMYF ILLSSSWALA ITHFQSSPLY
LTVGMPLLFT CLGGLRMVFW LRNRSVEPTA EMAHAAMTCA NRLAIVIAIT FAVWCYMLLP
YGDEYERSYV SFYMAITVMS CIFCLMYLRS AAVIVTIIVS VSFIIFFISL EKIICIAVAV
NIILVCAGII SVLLTNYRNF EQMVLSQHRA EALSNENLRL AHVDSLTELP NRRAFFSYLE
FELTKASTVG SRVALGLIDL DGFKPINDLY GHSTGDRLLV EVGKRLLDLP EGHKIFRLGG
DEFAVIATNS LDDEQFLSAA NALIERLHHP FHMAEATVQI SASMGIAIYP DLTLTPDRLL
DQADYALYHA KNTRRGSAVL FNACHERQIN INASIEQTLK QADISHEMSV VYQPIIDIRQ
GKPVGFEALA RWESPTLGCV SPAEFFPIAE RAGIVGLLTR PLLRKALDAA SQWDRDLRLS
FNLSAYDLNL SESATLLIDI IENGKFDAGR IDFEITETAF THDFTQVKRS IEMLRSRGCG
ISLDDFGIGY SSLTRLHSLP LTKIKIDRSF VVGLDKTPAS YKIVKSVLAL SQDMGLECVV
EGIETHDELA ALQKLGGILV QGYICSPPLR ESDVAEFIAR TADTSAFQAS GVFNF
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