| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7502 |
|---|
| Symbol | pecM |
|---|
| ID | 7380049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 452804 |
|---|
| End bp | 453727 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643641531 |
|---|
| Product | regulator protein pecM |
|---|
| Protein accession | YP_002539828 |
|---|
| Protein GI | 222102789 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | [TIGR00950] Carboxylate/Amino Acid/Amine Transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACA AGTCGAGGCA GCGGTTTGAT CTGTTAATCA CGGCGTTGGT TCCGCTCGTT
TGGGGCAGCA CCTATCTCGT GACAACCCAA TTCCTGCCGC CCGGTATTCC GCTGACCGCG
GCCGCTTTAC GCGCTTTGCC CGCAGGGCTT ATTCTGGTGT TGCTGCAAAG GAAAATGTTG
CAGGGCCACT GGTGGTGGCG CGCGGCCCTT CTGGGGGTGC TGAATATTGG TGCTTTCTTT
TACTTCTTGT TTCTGGCGGC TTATCATCTG CCCGGCGGGA TTGCGGCGCT GCTGATGTCG
ATTCAGCCGG TTATCGTTCT CATTTACAGC GCGATTCTAT TTCGCAACCC GGTGCGCGCA
ACGCAGATTC TGGCGTGCCT TTGCGCGGCG CTTGGGGTGG CGCTTGTCGC GCTGCGCTCC
GATGTCATGC TCAATACCCA AGGGGTGACT GCGGGTCTGG CCGGGGCATT CTCGATGGCG
ACGGGGATGG TACTGGCCAA GAAATTCGGT CGTCCCGACA ATATGTCGCT GCTGGCGCTG
ACCGGCTGGC AGCTGACCTT TGGCGGCTTG GCTCTGGTGC CCTTCGCGTT GATGACTGAG
TCCTTTCCCG AAACGCTCAC GCTGCGGAAT ATCGGCGGAC TGAGCTATCT CAGCCTGCTG
GGGGCGCTCG TGACCTATGC GCTTTGGTTT AGGGGAATCG CACGTCTGCC TGCCTTGACC
GTGTCGTTTC TTTCTCTTCT CAGCCCGCTG ACAGCGGCCA TTTTGGGGGC GATCTTTCTG
GGCCAGACAC TGACTTGGAT TCAGTTTGGC GGCGGTATGC TGGTCCTGGT TTCGGTCTAT
CTGTCGCAGC CACAGGTGAG TTTCTTCGGC TTGGGCTCGG CGTTTCGGAA GCAATTATCA
AGCAAACCGG CCCAAGGAGG ATAA
|
|---|
| Protein sequence | MDNKSRQRFD LLITALVPLV WGSTYLVTTQ FLPPGIPLTA AALRALPAGL ILVLLQRKML
QGHWWWRAAL LGVLNIGAFF YFLFLAAYHL PGGIAALLMS IQPVIVLIYS AILFRNPVRA
TQILACLCAA LGVALVALRS DVMLNTQGVT AGLAGAFSMA TGMVLAKKFG RPDNMSLLAL
TGWQLTFGGL ALVPFALMTE SFPETLTLRN IGGLSYLSLL GALVTYALWF RGIARLPALT
VSFLSLLSPL TAAILGAIFL GQTLTWIQFG GGMLVLVSVY LSQPQVSFFG LGSAFRKQLS
SKPAQGG
|
|---|
| |