Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7482 |
Symbol | amaB |
ID | 7380038 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | + |
Start bp | 439257 |
End bp | 440552 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643641522 |
Product | allantoate amidohydrolase |
Protein accession | YP_002539819 |
Protein GI | 222102780 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01879] amidase, hydantoinase/carbamoylase family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0271426 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACAGG CGGGTAAAGG ACTGTTAGAG GTCAATGGCG AGCGGCTTTT GGCCCGATTG GACCAATTTG CCGCGATTGG CGCAACGCCC AAAGGCGGTG TTAATCGGCA GGCCCTGACG GCGCTTGATC GTCAGGCGCG GCAATTGCTG GCCGATCTCG GCCAAACGCG TGGATTTTCT GTCTATCAAG ATCCGATCGC CAACCTGTTC CTGCGCCGCG AGGGCCAGAA CCCGGATTTG CCGCCGCTGC TGATCGGCAG CCATCTCGAC AGCCAGCCCT CTGGCGGGCG GTTTGATGGT GCGCTGGGCA CACTCTGCGC CTTCGAAGTT TTGGAAACAT TGGAAGACAA TGGCATAGAC ACCGTCAGGC CTGTCGAGGT TGTTGCCTTC ACCAATGAAG AAGGCTGCCG TTTTGCACCC GGATGCATGG GGTCCATGGC CTTTTCGCAG GGTGCCATTC CCGCCGCATG GCATACAGCG CGGGCAACGG ATGGCGCGCT GTTTTCCGAT GACTTGGCAG CAACGCTTGC TGATTTGCAA GGCGCTGCCA TGAGGCCGCT GGGCTTCCCG GTATTTGCTT ATCTTGAAGT GCATATCGAG CAAGGCCCAT CCTTGGAAAA AGAGGGTCTG CCCATCGGCA TCGTCACGGG CATTCAGGGC ACCCGCTGGC TTCAGGTGAC CATCTCGGGC CAGACTGCCC ATGCAGGCAC CACAGCACTG TCCTACCGCA AAGACCCCAT GCGCGCCGCC GTCTCCGGCT TGAACGTGCT TTATAACGAC ATCATGCCGC AAGATGCCCA TTCACGCCTG ACAGTCGGCC GGTTCTCGCT GGAGCCGGGG GCCATCAATG CCATTCCGGC AGCGGTGACG TTTTCGCTGG ATATCCGCCA CCCCAATGTT GAGCAACTGG ATCTGATCGA AGCGAAGATA CGCAAGGTCC TGCAGGATCT TGCCGTGGAG AATGGATGTG GTCTCGAAAT GGAACTGCTC TTCGATATGG CTCCAGCGCG TTTCCCGGAT CATCTGGTTA CCATACTGGA GGGTGCGGTT GTTAAGGCTG GTTTTGCCCA TAAATCCATG GTGTCCGGTG CTTTTCACGA TGCACTCTTC ATCAATCGTG TCGCACCCTC TGCGATGATT TTCACTCCAT GCCGAGATGG ATTGAGCCAT AACGAAGAAG AGTATGTAAT GCCTGCGGAT TCTGTCGCAG GGGCGCAAGT GCTGCTGACC GCGAGCTCGC AACTCCTGTC AAACTTGGCG ACACAGGCAT CTGTCGTTGT CGCTCACCTC CGTTAG
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Protein sequence | MAQAGKGLLE VNGERLLARL DQFAAIGATP KGGVNRQALT ALDRQARQLL ADLGQTRGFS VYQDPIANLF LRREGQNPDL PPLLIGSHLD SQPSGGRFDG ALGTLCAFEV LETLEDNGID TVRPVEVVAF TNEEGCRFAP GCMGSMAFSQ GAIPAAWHTA RATDGALFSD DLAATLADLQ GAAMRPLGFP VFAYLEVHIE QGPSLEKEGL PIGIVTGIQG TRWLQVTISG QTAHAGTTAL SYRKDPMRAA VSGLNVLYND IMPQDAHSRL TVGRFSLEPG AINAIPAAVT FSLDIRHPNV EQLDLIEAKI RKVLQDLAVE NGCGLEMELL FDMAPARFPD HLVTILEGAV VKAGFAHKSM VSGAFHDALF INRVAPSAMI FTPCRDGLSH NEEEYVMPAD SVAGAQVLLT ASSQLLSNLA TQASVVVAHL R
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