Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7329 |
Symbol | |
ID | 7380542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | - |
Start bp | 304403 |
End bp | 306283 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643641405 |
Product | ABC transporter nucleotide binding/ATPase protein |
Protein accession | YP_002539702 |
Protein GI | 222102663 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.148864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCTCTT CTGCGACCCT GCCCCAAACC GCACCCTCTC TGCTAGACAA TCAGGTTCTG GCGGTCGATG ACCTGACGGT ATCCTTTGCC ACATCCGAGG GCCGGGTGCA GGCCGTGCGC AATATCAGCT TTGCGGTTGG CCGGGGTGAA ACGCTTGCGA TTGTGGGTGA ATCTGGCTCT GGCAAATCCG TCACCTCGCT GGCGCTGATG CGGCTGATTG AGCATGGCGG TGGACGGATT GATAGCGGTG CTATGCTGTT TCGCCCCAGC AATGACAAGG TGCTGGATCT GGCAAAGGCC GATACGCCGA CCATGCGCAG TATTCGCGGT GCGGATATTG CCATGATCTT TCAAGAGCCG ATGACATCGC TCAACCCGGT GTTTACCGCT GGCGAACAGA TTGCTGAATC CATCCGCCTG CACCAGAAAA TGAACGAGGC CAGCGCCAAG GCGGAAGCGC TGCGCATGCT GGATCTGGTG CGCATTCCAG AGGCCAAACA TGTGTTTGGC CGCTATCCGC ATCAACTGTC CGGCGGCATG CGCCAGCGGG TGATGATTGC CATGGCGCTG GCCTGCCGCC CTTCCTTGCT GATTGCCGAT GAACCCACAA CGGCGCTGGA TGTCACCGTG CAGGCGCAAA TTTTGCAGCT GATCCGCCAG CTTCAGGACG ACATGAACAT GGGCGTGTTG TTCATCACCC ATGATATGGG CGTGGTGGCC GAAATTGCCG ACCGCGTATT GGTGATGCGC CAAGGTGAAA AGGTCGAGCA TGGCGCATCG AAAGACGTGT TCGAGCGCCC GAACCATCCC TATACCCAAG CCCTTCTGGC CGCTGTGCCG CGCCTTGGGG CCATGGCCGG GACCGATGGT CCGCGCGCTT TTGATCTGGT GGGGGCCGAT AGCACCCAGA CCCATGCAGA ACAACCTCCA GCACGGTTTG ATCTGCCGCC GATTTTGAAA GTGCGCGATC TGGTCACCCG CTTTGATGTT CGGCGCGGCC TGTTCAACCG GGTTGATCGG TCAGTTCATG CGGTGGAAAA GGTCAGCTTT GATCTGCATG CTGGCGAAAC CTTGGCATTG GTGGGCGAAT CCGGTTGTGG CAAATCCACC ACGGGCCGTT CACTCTTGCG TCTGGTCAAT AGCCAGAGCG GCAGCGTGGA ATTTGATGGC CGCAATGTTC TTGATCTTCC GGCCAGCGAG TTGCGTGGCC TTCGCCGCAG CATTCAGCTG GTGTTTCAAG ACCCCTTCGC CTCGCTGGAT CCAAGGCTGA CGGTTGGTTT TTCCATTATG GAGCCTCTGC TGATCCATGG CATTGCCAAA GGCGAAGAAG CGAGACAGCG CGTGGCTTGG CTTTTGGAGC GGGTGGGCCT GTCGGCTGCC CATTCTGAGC GCTATCCGCA TGAATTCTCC GGTGGCCAGC GTCAGCGCAT TGCCATTGCA CGTGCCTTGG CGCTGAACCC GAAAGTGGTG GTGGCCGATG AATCGGTCTC GGCGCTGGAT GTGTCGATTC AGGCGCAGAT CGTCAATCTT CTTTTGGAAT TGCAGCGTGA TCTGGGCATT TCCTATCTGT TTATTTCCCA CGACATGGCC GTGGTGGAGC GCGTCAGCCA CCGGGTGGCG GTGATGTATC TGGGGCAGAT TGTTGAAATT GGCCCACGCC GGGCCATTTT TGAAAACCCG CAGCACCCCT ATACCAAAAA GCTGATGGCA GCCGTGCCGA TTGCCGACCC GGCCCGCCGC CATTTGAAAC GGCAATTTGC TGTTGAAGAC CTGCCAAGCC CGATGCGCAA AAAGGGCGAT GAGCCAGTGG TAGAAGCCTT GCACGAGGTG TCACCCGGCC ATTTCGTGGC CCGGCACAGC GTTGGCGCGT TTAAAATGTA A
|
Protein sequence | MTSSATLPQT APSLLDNQVL AVDDLTVSFA TSEGRVQAVR NISFAVGRGE TLAIVGESGS GKSVTSLALM RLIEHGGGRI DSGAMLFRPS NDKVLDLAKA DTPTMRSIRG ADIAMIFQEP MTSLNPVFTA GEQIAESIRL HQKMNEASAK AEALRMLDLV RIPEAKHVFG RYPHQLSGGM RQRVMIAMAL ACRPSLLIAD EPTTALDVTV QAQILQLIRQ LQDDMNMGVL FITHDMGVVA EIADRVLVMR QGEKVEHGAS KDVFERPNHP YTQALLAAVP RLGAMAGTDG PRAFDLVGAD STQTHAEQPP ARFDLPPILK VRDLVTRFDV RRGLFNRVDR SVHAVEKVSF DLHAGETLAL VGESGCGKST TGRSLLRLVN SQSGSVEFDG RNVLDLPASE LRGLRRSIQL VFQDPFASLD PRLTVGFSIM EPLLIHGIAK GEEARQRVAW LLERVGLSAA HSERYPHEFS GGQRQRIAIA RALALNPKVV VADESVSALD VSIQAQIVNL LLELQRDLGI SYLFISHDMA VVERVSHRVA VMYLGQIVEI GPRRAIFENP QHPYTKKLMA AVPIADPARR HLKRQFAVED LPSPMRKKGD EPVVEALHEV SPGHFVARHS VGAFKM
|
| |