| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7056 |
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| Symbol | vgrG |
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| ID | 7380118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 49634 |
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| End bp | 51859 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641197 |
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| Product | vgrG protein |
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| Protein accession | YP_002539494 |
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| Protein GI | 222102455 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0833871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGACG TTCTGTCACC CGCCGATTTC ATCCAGGCCA GCCGTGTGCT AAAATTATCC
TCGCCCCTGG GTGAAGACCA GTTGCTGCCT GAGCGGATGA CGGTGGATGA AGGCGTCAAT
CGCCTGTTCG AAATCACTGT GTCAGTTCGG GCCAAACGCG AGGCAGTCAA GCCTGAAGAA
CTGATCGGCA AGCTGGTAGA TGTCTCCCTG GAAATCCGGC AGGGTGAACT GGACGGTGAT
GGCGTGCGCC GGCCGTTCAA TGGACTGGTG ACCAATCTGT CCGAGGGACC GCCGGTGACC
CGCGGGCTTC GCTCCTACAC ACTGACCATC CGCCCGCAAT TGTGGCTGTT GTCGCGCCGC
TCCGATTGCC GGATCTGGCA GAATATGACG GCCATCCAGG TGATGGAAAC CCTGTTTTCC
GAGCATGGCA TTCCGGCCCC CGCATATGCT CCTCTGCATA GAACGCCGCC GTCGCGGGAA
TATTCAACGC AGTGGAACGA GACCGATCTT GACTATCTGC TGCGCCGATT CGAACAAGAA
GGGTTATTCT ACTGGTTTGA ACACGAGACA GGCGTTCACC GCCTGAAGGT CAGCGACAGT
AAGGTAGCCT GGGGCTCGCC ATCGGCTGCG GCAGAAGGCG AACAGAATGT ACGTCTTGCC
CAGGGCTCGT CGGACCGCAA CCACATCAAC GAATGGATGC GGCAATTCTC CTATGTCCCT
GGCCAGCGTG CCGGTGCGGA CTGGAATTTT GAGACGCCCA GCACTGTACC GCTGAATGTC
ACGCCGTCAC TAATCCAGAT GCCGGGCGCC AAGCAGCGCG AGCTTTACGA ATATCCGGCC
CGCATCTCCG ATGTCAAAGA AGCCGAAGTG GCCGAAACCT TTCGGATGCA GGCCGTGGAG
GCTGATCATG AGAGGGTGAC GGGCCAGTCC AATGTGCGCT TTCTGGAAGC CGGTCGCCGG
TTCACGCCCT ATGAGGAACC GCATCCGGAA CACAAATACG AAGAGCATGT GATTACCCGA
ATTGTGCATC GGGTGGTGGA CCGATCCTAT GAGACGGCCA GCAATGAGAT GGAATATGCC
AACGCATTCG AGGCCATTCC CTCACGCGTT CCACTAACGC CGCACCGAGA GACCAAACGT
CCGCGTATCG AGGGGACACA GGTGGCGATT GTCGCCGGAC CATCGGGCGA GGAGATCCAC
ACGGATCAAT ACGGGCGATT AAAATTATGG TTCCCCTGGG ATAGAAAAGC ACAGAAGGAC
GGCAGTGATA CCTGCTGGGT GCGCGTCGCC CAGGCCTGGG GTGGTGGCAC CTGGGGTGCG
CAGGTTATTC CGCGGATTGG CATGGAAGTG ATGGTGTCAT TCGTGGATGG CGATCCGGAC
CGGCCATTGG TGATTGGCGT GGTGCCGAAC CCGAAAAACC CGGTGCCTTA TGAGCTGCCC
GCCAACAAGA CCCGGATGGT GCTGCGCTCC AACACCCACA AGGGCAGCGG CTTCAACGAG
ATGACCTTCG AGGACGAGAA CGGCCAGGAG AATATGTTCT TCCATGCCCA GAAGGATCAG
ACCATTAAGG TGTTGAATAA TCGCGTCAAA CGGGTTGATG CTCATCAGGT CGAGAGTATC
GGGCAGAATA AATCGATCGA TGTCGGTCAG AATCATCAGG AAAAGATCGG CGGGTCTAAA
AATGTCACCG TTGGTGGAGG TGCAAGCTCT TCTCTGTTCG CCTCTCTTGC CAGTATCGCG
GCGGCCGGTG GCATAGACAG CAAGAACGGT TCGTCTGCTA TCGGTCACGG TCTGTTGCAG
GAATTCGCCG GGGCCATGGC TTCGGCGGGA GTAACGGCGG AGGTTGCGTC TTTATCGGCG
AATGCGGATG TCACCAATGC CGGCAATTTC AGAACGGCGG CCGGCACGGA GCAGGCATCG
ACGGGATCGA CCCTTGGCGG ACTGTTGGGC AAAATTCTGC CGATCAGCGG CATCGTCAAC
ACGGTGATCG AAAAATTTCG CTCCGACACC ATTGGAATTG CCCGAACCGA ACAGATCGGT
CTCTACAAGA ACACCACCGT CGGTCACACC ATGACCATCA ACGCTGGCGA GGAATTCATC
ATCAAATGTG GCGAATCCAA GCTGATGATG GACAAGGCTG GCAATGTGAC GATCGTCGGC
ACGAAGTTCA ATTTCGCCGC ATCGGGACAT GTCCAGATCA ATGGCGAAGT CATCGATCTG
AACTGA
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| Protein sequence | MDDVLSPADF IQASRVLKLS SPLGEDQLLP ERMTVDEGVN RLFEITVSVR AKREAVKPEE
LIGKLVDVSL EIRQGELDGD GVRRPFNGLV TNLSEGPPVT RGLRSYTLTI RPQLWLLSRR
SDCRIWQNMT AIQVMETLFS EHGIPAPAYA PLHRTPPSRE YSTQWNETDL DYLLRRFEQE
GLFYWFEHET GVHRLKVSDS KVAWGSPSAA AEGEQNVRLA QGSSDRNHIN EWMRQFSYVP
GQRAGADWNF ETPSTVPLNV TPSLIQMPGA KQRELYEYPA RISDVKEAEV AETFRMQAVE
ADHERVTGQS NVRFLEAGRR FTPYEEPHPE HKYEEHVITR IVHRVVDRSY ETASNEMEYA
NAFEAIPSRV PLTPHRETKR PRIEGTQVAI VAGPSGEEIH TDQYGRLKLW FPWDRKAQKD
GSDTCWVRVA QAWGGGTWGA QVIPRIGMEV MVSFVDGDPD RPLVIGVVPN PKNPVPYELP
ANKTRMVLRS NTHKGSGFNE MTFEDENGQE NMFFHAQKDQ TIKVLNNRVK RVDAHQVESI
GQNKSIDVGQ NHQEKIGGSK NVTVGGGASS SLFASLASIA AAGGIDSKNG SSAIGHGLLQ
EFAGAMASAG VTAEVASLSA NADVTNAGNF RTAAGTEQAS TGSTLGGLLG KILPISGIVN
TVIEKFRSDT IGIARTEQIG LYKNTTVGHT MTINAGEEFI IKCGESKLMM DKAGNVTIVG
TKFNFAASGH VQINGEVIDL N
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