Gene Avi_6214 details

Gene Information

• Locus tag: Avi_6214
• Symbol: cyoC
• ID: 7381263
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: -
• Start bp: 1210357
• End bp: 1210974
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643649685
• Product: cytochrome o ubiquinol oxidase subunit III
• Protein accession: YP_002547909
• Protein GI: 222107118
• COG category: [C] Energy production and conversion
• COG ID: [COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3
• TIGRFAM ID: [TIGR02842] cytochrome o ubiquinol oxidase, subunit III

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.397474
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCCCA GAACTTTAAA AACCGCAAAG CCGGAATTCT ACCTCACCGA AGAGCATCAT 
CCGGAAAGCA GCACGAACCT TGGGTTCTGG CTCTATCTGA TGAGCGACTG CCTGATCTTC 
GCAATGCTGT TCGCCACCTA TGCCGTACTC GGCCGCAATT ATGCGGCTGG CCCGGCTCCG 
GCCGACCTGT TCGACCTGAA ACTGGTCGCG ATCAACACGG CAATGCTGCT GTTTTCCTCG 
ATCACCTATG GCTTTGCCAT GCTGTCGATG GAGAAGAACA ACAAGGCCGC TACGCTGATC 
TGGCTGGGCG TAACCGGTGT ATTTGGCGCG ATCTTCCTGG CGCTCGAGCT GTATGAGTTC 
GTTCACCTGA TCCATGAAGG AGCAGGGCCA AATCGCAGCG CCTTCCTGTC AGCCTTCTTT 
ACGCTGGTCG GCACCCACGG TTTGCACGTT ACCTTCGGCA TCATCTGGCT GGTGACGCTG 
ATGGCCCAGG TCGGCAAGCA CGGACTGATC GAAGCAAACC GCCGTCGCCT GATGTGCCTC 
TCGATGTTCT GGCACTTCCT CGACGTTATC TGGATTGGCG TATTCTCCTA CGTCTACCTA 
CTGGGAGTGA TCGGATGA 

 

Protein sequence

MDPRTLKTAK PEFYLTEEHH PESSTNLGFW LYLMSDCLIF AMLFATYAVL GRNYAAGPAP 
ADLFDLKLVA INTAMLLFSS ITYGFAMLSM EKNNKAATLI WLGVTGVFGA IFLALELYEF 
VHLIHEGAGP NRSAFLSAFF TLVGTHGLHV TFGIIWLVTL MAQVGKHGLI EANRRRLMCL 
SMFWHFLDVI WIGVFSYVYL LGVIG