| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6105 |
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| Symbol | |
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| ID | 7380758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1128777 |
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| End bp | 1129574 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649601 |
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| Product | short-chain dehydrogenase/reductase |
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| Protein accession | YP_002547826 |
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| Protein GI | 222107035 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.542291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAACA CAGCATCCGA TTACCGTCAA ATGTTCGACC TGACCGGACG CAAGGCCATT
GTGACCGGTG GGTCGCGGGG CATTGGCAAG GCGCTGGCCG AGGCGCTCGC GGCCCATGGG
GCAGATGTCG CCATTGTCGT GCGCTCAACG CTGGATCGTG CCGAAGAACT GGCCGCCAGC
CTGAGCGCGC AAGGGCGCGA CAGTTTTGCC CTGCAAGCCG ATGTCGCACA GGAGGCAGAT
GTCGAGCGCA TGACCCAGTC GGTGGTTGAT CGCTTCGGGC GTATCGACAT TCTCATCAAT
AATGCTGGTA TTGTGCTGCC CGCGCCAGCA GAGGATTGCA GCCTCGACCA GTGGCGCCAG
ACCATGGCGG TCAATCTGGA TGGCGTTTTC CTTGTCTCCA AACATGTTGG ACGGCAAATG
ATCGGGCAGA AAAGCGGCTC GATCATCAAT ATTGGCTCGA TGTCGGGGCG GATCGTCAAC
TGGCCCTTTC GTCACGCCGC CTATAACGTC TCCAAGGCGG GCGTCCATAT GCTGACCAAG
GCGCTGGCAA CGGAATGGGC TGAACACAAT ATCCGCGTCA ACGCGATTGC GCCGGGCTAT
ATTCGCACCG AGCTGACCGA CGACGTGCTG CGGGAACATC CCGATGTGGT CAGGGATCAT
TGGGCAAAAG GTGCCGTGCA AAACAGAATC GGTTCCGTCG AGGAACTGGC CGGTTCGGTG
GTCTATCTGG CTAGTGATGC CGGTTCCTTC ACCACAGGCG AAATCATCAC GATCGATGGC
GGCTTGACGC TGCGTTGA
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| Protein sequence | MSNTASDYRQ MFDLTGRKAI VTGGSRGIGK ALAEALAAHG ADVAIVVRST LDRAEELAAS
LSAQGRDSFA LQADVAQEAD VERMTQSVVD RFGRIDILIN NAGIVLPAPA EDCSLDQWRQ
TMAVNLDGVF LVSKHVGRQM IGQKSGSIIN IGSMSGRIVN WPFRHAAYNV SKAGVHMLTK
ALATEWAEHN IRVNAIAPGY IRTELTDDVL REHPDVVRDH WAKGAVQNRI GSVEELAGSV
VYLASDAGSF TTGEIITIDG GLTLR
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