| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6054 |
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| Symbol | |
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| ID | 7380880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1075761 |
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| End bp | 1076237 |
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| Gene Length | 477 bp |
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| Protein Length | 158 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643649557 |
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| Product | hypothetical protein |
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| Protein accession | YP_002547782 |
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| Protein GI | 222106991 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.932106 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCGATTT ATCTGAAGGT CGATGGTATC CAGGGTGATG CGACCCACGA AGAGCACCGC
AACTGGATGG ACATCGAGGC TATTCACTGG AACGTTAGCC GCGCCATGAA CACCACGGCT
GGTTCTACCG CCAACCGTGA AGCCTCTGAA CCCGCAATTT CCGAAGTCAT CCTGACCAAG
GTCAGCGATT CCTCTTCCAC GAAATTGTTC CAGGAAGCCT GCGCTGGCCG CACTGGCAAG
CAAGCGGTGA TCCACATGGT CACCACCGGC AATCCCGGCA ATACCTATAT CGAATACACG
CTCACCAACA CGCTGATCGC CAATTATTCC GTCGATTCCA GTGGTGACCG TCCGGTCGAA
ACCATCAAGC TGAACTTCAC CAAGATCGAA GTGAAGTATA CGCCTTACGA CGACCAGAAT
AACCCGAAGT CGCCGATGAT CGCATCTTAC GATCTGTCGA CCACAAAGGC TGCGTAA
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| Protein sequence | MPIYLKVDGI QGDATHEEHR NWMDIEAIHW NVSRAMNTTA GSTANREASE PAISEVILTK
VSDSSSTKLF QEACAGRTGK QAVIHMVTTG NPGNTYIEYT LTNTLIANYS VDSSGDRPVE
TIKLNFTKIE VKYTPYDDQN NPKSPMIASY DLSTTKAA
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