| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6014 |
|---|
| Symbol | |
|---|
| ID | 7380841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 1017460 |
|---|
| End bp | 1019673 |
|---|
| Gene Length | 2214 bp |
|---|
| Protein Length | 737 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643649516 |
|---|
| Product | exopolysaccharide polymerization/transport protein |
|---|
| Protein accession | YP_002547747 |
|---|
| Protein GI | 222106956 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.807866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGG ACATCGACAT TTTTCAAATC CCCGGGATCT TGCGACGGCG CTGGTATTAC
CTGGCGTTTT TTGCCGCGCT GTTTGCCGGT CTGGCGCTGC TCTATGCGCT CAGCCTGAAG
CCTGTCTATG TATCGTCCAC CCAGATCCTG CTCGATCCGC GCGGCCTGTC TGCCACCAGT
AGCGACAGCC GACAGCCGAC AGTCGCCGTA CAAAGCGACC CGGCCAGCCT CGACAGCCAG
ATCTATGTCG TCCTGTCCAG CGCCGTGCTG GGGGAAGTGG TCAACCGGCT CGACCTGACG
AAAGACTCCT ATCTCTATGC GGGAAAGCCA AGCAGCGCCG TATCCCCCGC TGAGGTCATG
GCTGCCACCA TCGGCGGGCT GGTCCGGCAT GTGAAAGTCG AGCGCGAAGG CCAGTCCTTC
ATCATGTCGA TCACGGTCGA ACACCGCATC GCCAAAACGG CAGCCGACAT TGCCAATATG
ATTGCCACCG TCTACCTGAA ACAGGTGGAC GAAGCCCGCT CCGACGCAGC GCGCCGGGCA
AGCGCCGCCT TCCAGGCGCA GGCCAGTGAA TTGCGCGATC GGGTGCTGAA GGCCGAAAGG
GCGGTCGAGG AATTCCGATC CGCCAACGGT CTGGCCAGCA CCGGCGTCAC CGGACTGGTG
ATCGACCAGC AACTAGCAGG CCTGAACCAG CAGTTGATCG CAGCACGCGG CGCGGAAGAA
CAGCAGCAGG CCATTTACCA GCAGACCCGC AATCTCACGG TCGCTGCCGT TGAAAACGGC
AATATCCCAG AAGCGGTACA ATCCACTACT GTCGGGCTGC TGCGCGACCG CTATGTCCAG
CTACAGGACC GCCAGGCCGA AGCGTCCGCC AATCTCGGCG GCAACCATCC GCAACTGAAG
GCGATCAATT CGCAGGTGGC CAGCATGCGC CAGGCCATCC AGCAGGAGCT GGACCGGGTG
CGCCAGTCGA TGAAGCTCAA CTATGACCGG GCGGTTGCCA ACCGCAAGGC GCTGGAAACC
CAGCTGCAAA GCCTGACGAA AACCAGTTTC GACAGCGGGG CGCGGCAGAT CACCCTGCGC
CAGCTGGAAA GCGAGGCGGA AGCCATCCGC ACCATTTACA AGGCCTTCCT CAACCGCGCC
GAGGAGCTGA GCCAGGAACA GACGATCTCC ATCAACAATT CCCGGGTTAT CACCGAGGCA
GTGGCGACAG CGAAATCGGT CACGACCCTC AAAGTGATGA TCCTTGCCGC CGCCATCCTG
TTTGGTCTGG CCTTCGGCAG CACGCTGGCG GTGGTGCTGG AACTCCTGTC GCGCAAGGAT
GTCGCGCCGC AAGCAGGCAT CGCCGCGCCT GCCACGGCGA CCTCATCGCC TCCTGGCAAA
GGCGAACCAC CCCCAGCACC GCCCATTGCG TCAGCAAGAC ATATCGCTCT GATTGCCGAC
GCTACGGAAC CTGAAAAACA GAAGTCCCGC AATCCGTTCA GCTTTATCAC CGCCTTTGGC
CGTCGGCTGG TCTCGCCTCT TGTTCCCGCA TCCAACCCGG CAACCGCATC ACAACCGGCG
GCAGGCGGCG CCTGGTCCCA TGCGGTCGCC AGCACAGCCG GTTTTCTGAT TGAATGCGGT
GAAGGCTATG CTGATCTGAC CGTTCTGTTT GTTGCAGCGG GCAGGCCGGT GGCCAGCGCC
TTTATTGGCG ATGTGGCACA GAAGCTGGCT GATCGGGACC GCGGCGTGCT GCTGGCCAAT
GGTGCCATGC TGGACCACCG CTTAGCGATC CGCTCGCACA GAAAAACCAA TGCCCGGCCA
AGCCTTGCCC AGGCATTGCA GCAGCCCGAT CTCGAAGACG CACCTCTCTC GCACATCCTG
CGCTACGAGC GCATCGCCCT GCCCCGCAAC CAGCCAGCGC GGCCAGCAGC GGGAGCATCG
GCCTCCTCCG GTCGCCCGAC CTATTCGCGA TTTGTCGAGC AAAGCCTTCA GGCGGAAACC
GATTTCACCT TGATTAATGC CTGCGGCGCT TGGATCAATG CCCGCGGCGC CGGAATCAAT
GCTAGCGGTG CTGGTGGCGA GCAGCATCTT ACTGCCCTTG CCGCCGAGGC CGATGTCATT
CTCGTCTTGA CCACGGCGCA AGACGAGGCC GCCGCCCTGG ATGAACTGCT GATGCGGCTG
GGCGAAGACG CAGAACGGGT CGTGGGTCGT ATCGTGCTCG AGACCGCCGG ATGA
|
|---|
| Protein sequence | MKMDIDIFQI PGILRRRWYY LAFFAALFAG LALLYALSLK PVYVSSTQIL LDPRGLSATS
SDSRQPTVAV QSDPASLDSQ IYVVLSSAVL GEVVNRLDLT KDSYLYAGKP SSAVSPAEVM
AATIGGLVRH VKVEREGQSF IMSITVEHRI AKTAADIANM IATVYLKQVD EARSDAARRA
SAAFQAQASE LRDRVLKAER AVEEFRSANG LASTGVTGLV IDQQLAGLNQ QLIAARGAEE
QQQAIYQQTR NLTVAAVENG NIPEAVQSTT VGLLRDRYVQ LQDRQAEASA NLGGNHPQLK
AINSQVASMR QAIQQELDRV RQSMKLNYDR AVANRKALET QLQSLTKTSF DSGARQITLR
QLESEAEAIR TIYKAFLNRA EELSQEQTIS INNSRVITEA VATAKSVTTL KVMILAAAIL
FGLAFGSTLA VVLELLSRKD VAPQAGIAAP ATATSSPPGK GEPPPAPPIA SARHIALIAD
ATEPEKQKSR NPFSFITAFG RRLVSPLVPA SNPATASQPA AGGAWSHAVA STAGFLIECG
EGYADLTVLF VAAGRPVASA FIGDVAQKLA DRDRGVLLAN GAMLDHRLAI RSHRKTNARP
SLAQALQQPD LEDAPLSHIL RYERIALPRN QPARPAAGAS ASSGRPTYSR FVEQSLQAET
DFTLINACGA WINARGAGIN ASGAGGEQHL TALAAEADVI LVLTTAQDEA AALDELLMRL
GEDAERVVGR IVLETAG
|
|---|
| |