| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5983 |
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| Symbol | exbD |
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| ID | 7380818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 995681 |
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| End bp | 996148 |
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| Gene Length | 468 bp |
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| Protein Length | 155 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649493 |
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| Product | TonB system transport protein ExbD |
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| Protein accession | YP_002547724 |
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| Protein GI | 222106933 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0848] Biopolymer transport protein |
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| TIGRFAM ID | [TIGR02803] TonB system transport protein ExbD, group 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.241351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGGAG GTATCCGCGA AAATTCGAGC GACGATCTGG TTGAAAACCA CGAGATCAAT
GTCACGCCCT TCATTGATGT CATGCTGGTT CTGCTGATCA TTTTCATGGT GGCGGCGCCG
CTGGCGACTG TGGATGTCAA TGTCGACCTC CCCGCCTCCA GCGCCGCACC GGCCAAACGA
CCGGACGAAC CGGTCTATCT CACCCTGAAA CAGGATCTCA GCTTGGCGCT TGGCAATGAC
ACAGTCAGCC GCGACAGGCT GCCGACTGTG CTGGAACAGG TCTCCAAGGG CAATAAAGAC
ACGCGGATTT TCCTGCGCGC CGATAAGAAT GTCGGCTACG GCGAATTCAT GACGGTGATG
AACCTGCTGC GCGACGCTGG CTATCTGAAG ATTGCCCTGG TCGGCGTCGA AACATTGCCG
CAGGCGACCA GCATTACGCC GCCCGCAGAG GATACCAACG GCCAATGA
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| Protein sequence | MAGGIRENSS DDLVENHEIN VTPFIDVMLV LLIIFMVAAP LATVDVNVDL PASSAAPAKR
PDEPVYLTLK QDLSLALGND TVSRDRLPTV LEQVSKGNKD TRIFLRADKN VGYGEFMTVM
NLLRDAGYLK IALVGVETLP QATSITPPAE DTNGQ
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