| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5909 |
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| Symbol | caiB |
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| ID | 7381002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 918745 |
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| End bp | 919896 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649424 |
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| Product | L-carnitine dehydratase |
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| Protein accession | YP_002547661 |
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| Protein GI | 222106870 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAATG CGCCACTTTC GGGATTGAAG GTCATTGAAC TGGCCCGGAT TCTGGCCGGT
CCCTGGATCG GCCAGACGCT GGCCGACCTC GGCGCTGATG TGATCAAGGT GGAAAGCCCG
CAAGGCGACG ATACCCGTAG CTGGGGACCG CCGTTCATAG ACGACGGCGT GGAAAAGGCC
GCTGCCTATT TCCATGCCTG CAATCGCGGC AAACGGTCGA TCACGGCGGA TTTTACCAGG
GCTGAAGATA TCAAAACCCT TCGCGATCTG ATTGCCTCCG CCGATGTGGT GATCGAGAAT
TTCAAGGTTG GCGGTCTTGC CAAATATGGC CTCGATTACG ACAGCCTGAA GGAGCTTAAT
CCTAGGTTGG TCTATTGCTC CGTCACCGGC TTTGGCCAGG ATGGGCCTTA TGCGCAACGT
GCCGGATATG ATTTCATGAT CCAGGGCATG AGCGGCATCA TGGACCTGAC CGGAGAGCCA
GACGGTGCGC CGCAGAAGAT CGGCGTTGCC TTTGCCGATA TCTTCACCGG GCTTTACGGG
GTCATCGCTA TTCAGGCGGC GCTGGCGCAA CGTCTTCAGA CCGGGCGCGG TCAGTTCATC
GACATGGCAC TGTTCGACTG CATGTCGGCG GTATTGGCCA ATCAGGCGAT GAATTACGCA
GCGTCAGGCA TTGTGCCGAA GCGCATGGGC AATAACCATC CCAATATTGC GCCCTACCAG
ACCTTTCCGG TTGCCGATGG CCATATCATC ATTGCATGCG GCAATGATGG CCAATTTGTC
CGGCTGTGTG GTGTGCTGGG CCTTTCTGAG CTGGCGACAA CACCTGAATT TTCCACCAAT
TCTGCCCGTG TCGCCCATCG GGATCAATTG ACCACCGTGA TGGAAGACAA GACCCGGCAA
TTCGAGCGCA ACGACCTCTT GGCGCGGCTG GAGGCGGCGA CCGTTCCGGC CGGGCCGATC
AACACGGTGG CGGACCTGTT TGCCGATCCG CAATTTGCCT TCCGGCAAAT GAAAATCATC
CCGGATGGCG TGCCGGGTAT CCGAACCCCC ATCGTCTTTT CTGAAGCCGA GCTTGAGACG
ACGAGGCGCG CACCGCGCCT GGGAGAGCAT ACGGCTGAGG TGCTTGCGGA GATACGGCAC
GACAAGGATT GA
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| Protein sequence | MSNAPLSGLK VIELARILAG PWIGQTLADL GADVIKVESP QGDDTRSWGP PFIDDGVEKA
AAYFHACNRG KRSITADFTR AEDIKTLRDL IASADVVIEN FKVGGLAKYG LDYDSLKELN
PRLVYCSVTG FGQDGPYAQR AGYDFMIQGM SGIMDLTGEP DGAPQKIGVA FADIFTGLYG
VIAIQAALAQ RLQTGRGQFI DMALFDCMSA VLANQAMNYA ASGIVPKRMG NNHPNIAPYQ
TFPVADGHII IACGNDGQFV RLCGVLGLSE LATTPEFSTN SARVAHRDQL TTVMEDKTRQ
FERNDLLARL EAATVPAGPI NTVADLFADP QFAFRQMKII PDGVPGIRTP IVFSEAELET
TRRAPRLGEH TAEVLAEIRH DKD
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