Gene Avi_5893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5893 
SymbolnirD 
ID7380990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp905294 
End bp905629 
Gene Length336 bp 
Protein Length111 aa 
Translation table11 
GC content61% 
IMG OID643649412 
Productnitrite reductase small subunit 
Protein accessionYP_002547649 
Protein GI222106858 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 
TIGRFAM ID[TIGR02378] nitrite reductase [NAD(P)H], small subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCAGA ACTGGACCTC AATCGGCCAT ATCGACGACA TTCCGCTGCG CGGCGCGCGC 
TGCGTAAAAA CTCCTCAGGG CAAGATCGCG GTGTTTCGCA CTGCCGAAAA CGAGGTCTTC
GCCATCGAGG ACCATTGCCC GCACAAGGGT GGACCGCTTA GCCAGGGCAT CGTCCACGGC
AAGGCGGTCA CCTGCCCGCT GCACAATTGG GTGATCTCAC TGGAAAGCGG CAAGGCGCTG
GGTGCCGATG AAGGGGCCGT GCGCACGATT GCGGTGCGCA ATGTCGAAGG CATGCTCTCC
ATAGCCACGG AAAGCCTGTT GCAGGCGGCG GAGTGA
 
Protein sequence
MNQNWTSIGH IDDIPLRGAR CVKTPQGKIA VFRTAENEVF AIEDHCPHKG GPLSQGIVHG 
KAVTCPLHNW VISLESGKAL GADEGAVRTI AVRNVEGMLS IATESLLQAA E