Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5852 |
Symbol | |
ID | 7380630 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 869830 |
End bp | 871107 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643649380 |
Product | hypothetical protein |
Protein accession | YP_002547617 |
Protein GI | 222106826 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0575384 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGGCAAA ATAAGCTCGC CACCGCAGAC ACGAATTTAG AAGCCAACGG CGATCCGGGA ACGCCAAAAT CGGCCAAGGC AAAGCGTTAC GCCTTGCTAT CGGCCATGTT CCTGATGTCG ATGTCGGCTG TTGGCCCAGG TTTCATTACT CAGACAGCCA CTTTCACCGT CAAGCTCGGT GCAGCTTTTG CCTTCGGCAT CTTCGTTTCC ATTATTATCG ATTTCATCGT CCAGGCGAAC ATCTGGCGGC TCGTCACAGT CACCCGCATG CGCGCCCCGG CCATTGCCAA CAGCGCCATT CCCGGCTCAG GCTACGTGCT GGCCGTGCTG GTCATCATTG GCGGGTTGTT CTTCAATATC GGCAATATCG GCGGCGCGGG TCTGGGTTTT AACGCCATGA TCGATCTCGA TCCGAAGATC GGCGGTGCCA TCGGCGCACT TGCGGCCATC GGTATTTTCC TGTCTCGCCG GGCAGGTGTC GCCATGGACC GGGTGGTCTT TGTCGCGGCT TTCGTCAAAC TCGCCCTCAT TCTCTATGCA GCAATCGTCT CCGGCCCGCC GGTTGCCGAA GCGCTGCGCC AGACCATTTT GCCCGACACG ATTGATTTCG CCACCATCAC CACTATCGTC GGCGGCACCG TCGGCGGCTA TATTACCTAT GCTGGTGCCC ACCGCCTGCT CGACAAAGGC ATGGGCGGCG TTGAGAATAT CGGTGCCGTC AACCGCGCGG CGTTCAGCGG CATCGCCATT ACCGGCGTGC TACGTTACAT CCTGTTTCTC GCCATTCTCG GCGTTGTCGC CAGCGGCACG GTCATCGACC TGTCTGGTAA GGCTGCCAAT CCGGCAGGCC AGGCCTTCCA TGCGGCTGCC GGCAATATCG GCTTTCGTCT GTTCGGCGCG GTGCTGCTGG CATCGGCCAT GACCAGCATT ATCGGTGCAG CCTATACATC CGTGTCATTT CTAACTGCCT TCAAGAAGGA CATGACAGAG CGTCAGCGCA ATTTTGCCAC TGTCGGCTTC ATCGCCTTCT CACTGATAAG CTACATGCTG ATCACCACCC CGCCCGCGGC CATGCTGGTC TTCGTTGGCG GCCTGAACGG TCTCGTCCTG CCTATCGGCC TGTCGATCTT CATCTATGCC GCCTGGGCGC GCTCCGACCT GATGGGCGGC TATCGTTATC CGCGCTGGCT TTTGATCCTC GGCGTCCTCA CCTGCGCGCT GACATGGTAC ATGGCCTATA AATCGGTCGG GCCAATCTTT GCCCTGCTTG GCCTGTAA
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Protein sequence | MGQNKLATAD TNLEANGDPG TPKSAKAKRY ALLSAMFLMS MSAVGPGFIT QTATFTVKLG AAFAFGIFVS IIIDFIVQAN IWRLVTVTRM RAPAIANSAI PGSGYVLAVL VIIGGLFFNI GNIGGAGLGF NAMIDLDPKI GGAIGALAAI GIFLSRRAGV AMDRVVFVAA FVKLALILYA AIVSGPPVAE ALRQTILPDT IDFATITTIV GGTVGGYITY AGAHRLLDKG MGGVENIGAV NRAAFSGIAI TGVLRYILFL AILGVVASGT VIDLSGKAAN PAGQAFHAAA GNIGFRLFGA VLLASAMTSI IGAAYTSVSF LTAFKKDMTE RQRNFATVGF IAFSLISYML ITTPPAAMLV FVGGLNGLVL PIGLSIFIYA AWARSDLMGG YRYPRWLLIL GVLTCALTWY MAYKSVGPIF ALLGL
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