| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5565 |
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| Symbol | |
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| ID | 7381473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 573877 |
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| End bp | 577125 |
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| Gene Length | 3249 bp |
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| Protein Length | 1082 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649145 |
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| Product | alpha-amylase-related protein |
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| Protein accession | YP_002547382 |
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| Protein GI | 222106591 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCAAT CACATTCTGC CGAACAACAA GACACCGCCC GGGATTCTTT CGCTCCCAGA
GCACCAAAGA TTTATTATGT CCATCCATTG CTGCTCAAAG GCATGGCGGA CTGGAACACC
CTGTTTGAGC ATGTCCGAGG ACTCGGCTTC GATACAATAC TCAGTGCGCC GCCATTTTCG
CGTGCATCGG GTGCGAGCCT ATTCATATCC AAATCCTTCG ACACTTTCGA TCCCGCTCTG
GACCTCCCAG GCAGCGGCGA TGACCGCCTG CGGGAGTTGA CCGATGCCGC CCGGGCGCAT
GGCCTGGAAT TCATGCTGGA TATGGTGATT GACCGGATTG CGACGGAAAC GCCGCCTGGG
CAGGTTGCCG ATCCAAGAAT TTCGCCCTTT CATTCCGGTA GCCGCCCTGT TGATTTTACC
AATAACGATG AAGCAACTCA TCTGCTGGGT GAATGGCACA CGCGCATTGC ACGGTTTACT
GCGGCTGGCG TGGCTGGTTT CCGCTGTATC GGCATTGATG CAGCGCCTTC GTCCTTCTGG
CGAGACCTGA TCGCCGCCGG TCCGTCGGCC CGGTTCTTCG CCTGGACGCC GGGTACGAGT
TTCGAGGCGC GACGGGCCTT GCAAGGCACA GGTTTTGACG GCTGTTTCTC ATCCTTTGCC
TGGTGGAATC TGGAGGAGCC ATGGTTTGTG GAGGAATACG CGCTGCAACG CCCCCTCGGC
ATTCAGATCG CTTTTCCCGA AGCCCCTTTT GCCCGGCGGA TCGCCCACGG CACGGAAAGC
CGTGAAATCA TCGAGCGGAA GGCGATCCGC GCCCTGAACC TTGCCGCAGC GTTCGGCCCG
TTGATGGTGC CGATGGGTTT CGAATTCGGG GTGAGCACGC CGCTCGATCC CATGCATGGC
GATGGCCAAG GTATCAGGGG CCTGAAAGAC CAGGGCAGTT TTGATCTGTC CGCCAGCATC
CGCGCCCTCA ATGATCAAGC CGGACAACGG CATGTTTTTC TCGGAAAACC CTTGCGGATC
GTCGCCAAGG CAGGTTCACC GGCTTGCGCT CTGGTCCAAT CCGACAGGGA AGACCTGCGG
TCGTCGCAGC GCATTCGGAT CGTCGCCTTC AATCGCGATT TACGCACATC AGCGACCCTA
CCGCTCCATG CGCTGCACGA ACTCGCCTCC GGCTTCCTGC CACTGACGCT CGACCAGGGC
CAAGCGCCGT CCGCGATCTT GGAGACAGGA AAAATCGGCC CGGGCGGGCT CTGCCTGCTC
ACTGGCGCAC GGGCAGATGC CATCGTGTTC GAGCCTGAAA CGACGGCAGG CGAGGCCGCC
GCCGCACCGC GTCTGGCGAT TGAAAATATC CAGCCGTCCG TGGATGAAGG ACGTTTCCCC
ATCAAGCGCA TTGTCGGCGA CCGGATCACG GTTGAAGCCG ATATTTTTGG GGATGGTCAT
GACCCGCTGT CTGCCGCCGT GCTCTGGCGG CCCTGCGATA GGGATGAGTG GACCGAAATC
CGTATGGAAC TGGTCGAAAA CGACCGGTGG CGGGGTGAAT TTTCGTTGTC ACGGCTCGGA
CGGCATGAAT TTGTCGTCGA GGCTTGGCGC AATCCGTTTG CGATTTTTCA TTATGAGCTC
TCCAAGAAGC ATGAGGCACG GCTGGATCTG AAACTGGAAT TGCAGGAGGG CATCGCCCTT
GTGCGAGAGG CTTTGGCAAG AGCCGATGGC CAACTGGCTT CAGACCTTGA ACAACTAATC
GCTCATCTGG AACAGACCTC GGAACAGCAA CGCGCCGACC TGTTGCTGCA AGCCGATACA
TTCGCCCTGA TGGACCGCGC CGATGCCAGG CCTTTCCGGT TGCGCTCGCA GCCGCTTCCT
GTCGATGCGG AGCGGTTGGA GGCGGGTTTT GCCAGCTGGT ACCAGCTTTT CCCCCGCTCA
CAAAGCGGCG ACCCCGATCG TCACGGCACA TTCGCCGATG TCATCAAACG CTTGCCAGCC
ATTCGCGCCA TGGGTTTCGA TGTGGTCTAT TTCCCGCCGA TCCATCCGAT CGGCACGACC
AACCGCAAGG GCCGCAACAA CAGCCTGAAG GCAGGCCCGA ACGATCCCGG CAGCCCCTAT
GCAATCGGCT CGCCAGATGG CGGCCATGAC GCCATCCATC CACAGCTCGG TACATTTGAG
GATTTCAGAA CCCTGGTTGC CGCTGCCCGC GATGAGGGGC TGGAGATTGC GCTCGATCTC
GCCATCCAGG CCTCACCCGA TCACCCATGG CTGACGCAGC ATCCCGGCTG GTTCGATTGG
CGTCCGGATG GCACGATCCG CTATGCGGAA AATCCACCGA AGAAATACGA GGATATCGTC
AACGTTGATT TCTACGCGAA GGACGCGGTT CCCGCGCTTT GGCAGGCCTT GCGCGACATT
GTCGAGATGT GGGTCGGCGA AGGCGTCAAA CTGTTTCGCG TCGATAATCC GCACACCAAG
CCGTTTCCGT TCTGGGAGTG GCTGATCGGC GATATCCGTG CCCGCCACCC GGAAGTGGTC
TTCCTGTCGG AAGCCTTTAC CAAGCCAAAG GTGATGTACA GGCTGGCCAA GATCGGCTTT
TCGCAATCCT ACACCTATTT CACCTGGCGC AATCTGCGTT GGGAGCTTGA GCAATATATG
CTCGAGCTGA CGACACAGGC ACCGAAGGAA TTCTTCAGAC CGCATTTCTT CGTCAACACC
CATGATATCA ACCCCGATTT TCTGCAGAAC GCACCGCGCT CGGCCTATCT GATCCGGGCG
GGCCTGGCTG CGACGCTTTC CGGGCTTTGG GGTGTCTATA ACGGTTTTGA ACTGTGCGAA
GGCCGCCCGG ATGCCAAGCG CAAGGAATAT GCCGACAGCG AAAAATACGA GATCACCGCC
TGGGACTGGG ACCGACCCGG CAATATCATT GCCGAGATTA CCATGCTGAA CCGCATTCGC
ACCGAAAACG CGGCGCTGCA TTCCCATCTC GGCCTGACGC TGCTGCCCTC TTCCAACGAC
CAGGTGATGT TTTTCGAAAA GGCCAGTCCG GGCCGCGAAA ACGTTCTGCT CGTGGCTGTC
AGCCTCGACC CGCACAATGA CCAGACCAGC TCAATCGAGC TGCCTTTGTG GCGCTGGGGC
CTGCCCGATA GCGGCAGTCT CGCGCTCGAG GATCTGGTGA CAATGAGAAA ATTCACGTGG
ACAGGCAAAT GGCAGACGGT CGGCTTCAAC CCGCATGTCC TGCCGTTCAG CATTTACCGC
GTCAGGTGA
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| Protein sequence | MTQSHSAEQQ DTARDSFAPR APKIYYVHPL LLKGMADWNT LFEHVRGLGF DTILSAPPFS
RASGASLFIS KSFDTFDPAL DLPGSGDDRL RELTDAARAH GLEFMLDMVI DRIATETPPG
QVADPRISPF HSGSRPVDFT NNDEATHLLG EWHTRIARFT AAGVAGFRCI GIDAAPSSFW
RDLIAAGPSA RFFAWTPGTS FEARRALQGT GFDGCFSSFA WWNLEEPWFV EEYALQRPLG
IQIAFPEAPF ARRIAHGTES REIIERKAIR ALNLAAAFGP LMVPMGFEFG VSTPLDPMHG
DGQGIRGLKD QGSFDLSASI RALNDQAGQR HVFLGKPLRI VAKAGSPACA LVQSDREDLR
SSQRIRIVAF NRDLRTSATL PLHALHELAS GFLPLTLDQG QAPSAILETG KIGPGGLCLL
TGARADAIVF EPETTAGEAA AAPRLAIENI QPSVDEGRFP IKRIVGDRIT VEADIFGDGH
DPLSAAVLWR PCDRDEWTEI RMELVENDRW RGEFSLSRLG RHEFVVEAWR NPFAIFHYEL
SKKHEARLDL KLELQEGIAL VREALARADG QLASDLEQLI AHLEQTSEQQ RADLLLQADT
FALMDRADAR PFRLRSQPLP VDAERLEAGF ASWYQLFPRS QSGDPDRHGT FADVIKRLPA
IRAMGFDVVY FPPIHPIGTT NRKGRNNSLK AGPNDPGSPY AIGSPDGGHD AIHPQLGTFE
DFRTLVAAAR DEGLEIALDL AIQASPDHPW LTQHPGWFDW RPDGTIRYAE NPPKKYEDIV
NVDFYAKDAV PALWQALRDI VEMWVGEGVK LFRVDNPHTK PFPFWEWLIG DIRARHPEVV
FLSEAFTKPK VMYRLAKIGF SQSYTYFTWR NLRWELEQYM LELTTQAPKE FFRPHFFVNT
HDINPDFLQN APRSAYLIRA GLAATLSGLW GVYNGFELCE GRPDAKRKEY ADSEKYEITA
WDWDRPGNII AEITMLNRIR TENAALHSHL GLTLLPSSND QVMFFEKASP GRENVLLVAV
SLDPHNDQTS SIELPLWRWG LPDSGSLALE DLVTMRKFTW TGKWQTVGFN PHVLPFSIYR
VR
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