Gene Avi_5564 details

Gene Information

• Locus tag: Avi_5564
• Symbol: aglA
• ID: 7381472
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: -
• Start bp: 570563
• End bp: 573865
• Gene Length: 3303 bp
• Protein Length: 1100 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643649144
• Product: alpha-glucosidase
• Protein accession: YP_002547381
• Protein GI: 222106590
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases; [COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis
• TIGRFAM ID: [TIGR02456] trehalose synthase; [TIGR02457] trehalose synthase-fused probable maltokinase

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.657284
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACAGC AACATCAGCA GGCCGAGACC GATCCGCTTT GGTATAAGGA TGCAATTATC 
TATCAATTGC ATATCAAGTC CTTTTACGAT GGCAATGGCG ACGGGATCGG CGACTTCAAG 
GGCTTGACGG AAAAGCTCGA CCATATCGCC TCGCTTGGCA TTACCGCCAT CTGGATCTTG 
CCGTTCTTTC CCTCGCCGCG GCGCGATGAT GGCTATGACA TCGCCGATTA CGGCAATGTC 
AGCCCGGACT ATGGCACGAT GGACGATTTC CGCGCCTTCG TGGATGCCGC TCATGCCCGT 
GACATGCGCG TCATCATCGA ATTGGTGATC AACCATACAT CCGACCAGCA TCCCTGGTTT 
GAGCGAGCCC GCAATGCGCC TGCCGGTTCG CCGGAACGGG ATTTCTATGT CTGGTCGGAG 
ACCGATCAGA AGTTTCCCGA AACCCGGATC ATCTTTCTCG ATACGGAAAA GTCCAACTGG 
ACCTGGGACC CGGTGGCTGG CGCCTACTAT TGGCACCGCT TCTATTCCCA CCAGCCGGAC 
CTCAACTTCG ACAATCCGGC TGTGCTGGAC GAATTGATCA CGGTCATGCG CTTCTGGCTC 
GATACCGGCA TTGATGCCTT CCGGCTCGAC GCCATTCCTT ACCTTGTCGA ACGCGAGGGG 
ACCAATAACG AGAACCTGCC GGAAACCCAC GCGATCCTGA AGAAGATCCG CGCGGCAATG 
GACGAAGGTC ATCCGGGCAA GATGCTGCTG GCCGAGGCCA ATCAATGGCC TGAAGATACC 
CAGGAATATT TCGGTGACGG TGACGAATGC CATATGGCCT TTCACTTCCC GCTGATGCCG 
CGCATGTATA TGGCGATTGC CAAGGAAGAT CGTTTTCCGA TCACCGACAT CATGCGCCAG 
ACGCCTGAGA TCCCCGATAA TTGCCAATGG GCAATTTTCC TGCGCAATCA CGACGAACTG 
ACGCTGGAAA TGGTCACCGA CGCCGAGCGG GACTATTTGT GGAATACCTA TGCCGCCGAC 
CGCCGCGCCC GCATCAATCT CGGCATTCGC CGCCGGTTGG CGCCGCTGAT GGAGCGTGAC 
CGCCGCCGCA TCGAGCTGAT GAACGCGCTG CTGCTGTCGA TGCGCGGCAC GCCGGTGATC 
TATTACGGCG ACGAGATTGG CATGGGCGAT AATATCTATC TCGGTGACCG CGACGGGGTG 
CGCACGCCGA TGCAATGGTC GCCTGATCGC AATGGCGGGT TTTCCCGCGC CGACCCGGCC 
CGTCTGGTCC TGCCGCCGCT GATGGACCCG CTTTATGGGT ATGAGGCGGT CAATGTTGAA 
GCACAGTCGG CTGATGCCCA TTCGCTGCTG AACTGGAGCC GCCATATGCT GGCGCTCCGG 
CGTAAATTTA CTGCATTCGG ACGAGGCACA TTGCGGTTCC TGTCACCGGC CAACCGCAAG 
ATCATCGCCT ATCTGCGGGA ATATGAAGGC GAAGTGCTGC TGTGCGTCGC CAATTTGTCG 
CGCCTGCCGC AGGCGGTTGA GCTGGATCTC GCTGAATTCG AAAAGCGCAT TCCCATCGAA 
CTAACAGGCA TGTCGGCATT CCCCCCCATC GGCCAGCTGA CTTATCTGCT GACCCTGCCA 
CCCTATGGTT TCTTCTGGTT CAAGCTGTCG GGCGAGACGG ATGCGGATGG GCCAACCTGG 
CGCACCGAGC CACCGGAGCA ATTGCCGGAT TTCGTTACCA TCGTCATGCG GCGCGAGCTT 
GCCCAGTTGC TGGACGAGCC TGGTATCCAA GAGACGATTT CGCGTGAAAT CCTGCCTGCC 
TATCTTGCCA AGCGCCGTTG GTTTGCCTCC AAGGGCGAAA GGGTGAAGCG CGCCTCGCTG 
ATCTCGACCA TTCCGATGCC CTTCGGCAAT GACCTGCTGC TGGGTGAGTT GGAAACCGAG 
TTGGAAGATC GCGTTGAGCG GTATTTTCTA CCGTTCGCCA TCGCCTGGGA CGATGAGAAT 
CCCCATGCGC TTGCCCAGCA ACTGGCCTTC GCAAGAGTGC GGAAAGGACG CCGGGTTGGC 
TTCCTGACGG ATGGCTTTGC CATGCAAAGC ATGGCACGCG GCGTCATCAG GGCTTTGCGC 
GAACGCTCCA GCATTTCCAG TAAAAGCGGC TCCATCGATT TCATCGGCAC CGAACAACTC 
GATGGCATTG AGCTGTCCGA CGACATGCAA GTCAAATGGC TCTCGGCTGA ACAATCCAAT 
AGTTCGTTGA TCATCGGCGA CATGGCGATG ATCAAGCTCA TCCGTCATAT CCATCAGGGC 
ATCCACCCGG AAGTGGAAAT GACCCGCCAC CTGACGCGGC TTGGCTACGC CAACACTGCC 
CCGCTGCTGG GAGAGGTCGT CAGGGTTTCA CCTGAAGATG AGCGCTCGAC ATTGATCATC 
ATCCAGGGCG CCATCCGCAA TCAGGGCGAT GCCTGGACCT GGATGCTCGA CACGCTCAGG 
CAAACGCTCG AACAAAGCAT GGTTGCCGGT CAGGATGATG ACGCCGAGCA AGAGCGGTTC 
AACCCGCTGT TCAATCAAGC AGCCGTGATC GGCAAGCGGC TTGGCGAGTT GCATGTGGCA 
CTGGCCAAGC CAACAGACGA CCCGGCTTTC GCGCCGGTCG CAATGAGTGA TGAGGATGTC 
TCCGTTTGGG CGCGATCAGT CATGGCCCGC GTTGCCGACT GCCTGGACAG AGTGTCTGAG 
ATTGGTCATG GCAGCGACAG TGATGGTCTC GATACTGAAA CCATCAGGGT CAGCACCATG 
TTGGCGGACC GTCGGGAGCA GATCTTGAGC GCGGTCGGTA CGCTGGCCAG TGTTGCCAAG 
GACACGCTGA TGATCCGCAA CCACGGCGAT TTCCATCTGG GCCAAATCCT GGTTGCCGAA 
GACGATGTTT ATATCATCGA TTTCGAAGGC GAACCGGCCC GCCCCCTCGC CGAACGGCGG 
GCAAAGACCA ATCCGCTGCG CGACGTGGCC GGGCTGATCC GGTCACTGAG CTATCTCGCT 
GCTTCCGCCG ATACGGGCCG CGAGATCGTC GTCCAGGGCG ACAGTGCAGC AAGAGCCGCG 
CTGATCGAGG CGTTTCGCAA GAAGGCCGAG ACGCATTTCC TCGACAGCTA TTTCACGGCA 
GTCGACGGAG AACCATCACT GGCAATGGAC CCTGAAAAAC GCCGCGAGAT CCTCGACCTG 
TTCCTGCTGG AAAAGGCCGC CTATGAAATC GGCTATGAAG CCAGCAATCG GCCCGGCTGG 
ATCGCTATTC CGCTTGCCGG GTTTGCCGAC ATTGCCGAAC GGCTGACGGA GAATTCCCTA 
TGA 

 

Protein sequence

MEQQHQQAET DPLWYKDAII YQLHIKSFYD GNGDGIGDFK GLTEKLDHIA SLGITAIWIL 
PFFPSPRRDD GYDIADYGNV SPDYGTMDDF RAFVDAAHAR DMRVIIELVI NHTSDQHPWF 
ERARNAPAGS PERDFYVWSE TDQKFPETRI IFLDTEKSNW TWDPVAGAYY WHRFYSHQPD 
LNFDNPAVLD ELITVMRFWL DTGIDAFRLD AIPYLVEREG TNNENLPETH AILKKIRAAM 
DEGHPGKMLL AEANQWPEDT QEYFGDGDEC HMAFHFPLMP RMYMAIAKED RFPITDIMRQ 
TPEIPDNCQW AIFLRNHDEL TLEMVTDAER DYLWNTYAAD RRARINLGIR RRLAPLMERD 
RRRIELMNAL LLSMRGTPVI YYGDEIGMGD NIYLGDRDGV RTPMQWSPDR NGGFSRADPA 
RLVLPPLMDP LYGYEAVNVE AQSADAHSLL NWSRHMLALR RKFTAFGRGT LRFLSPANRK 
IIAYLREYEG EVLLCVANLS RLPQAVELDL AEFEKRIPIE LTGMSAFPPI GQLTYLLTLP 
PYGFFWFKLS GETDADGPTW RTEPPEQLPD FVTIVMRREL AQLLDEPGIQ ETISREILPA 
YLAKRRWFAS KGERVKRASL ISTIPMPFGN DLLLGELETE LEDRVERYFL PFAIAWDDEN 
PHALAQQLAF ARVRKGRRVG FLTDGFAMQS MARGVIRALR ERSSISSKSG SIDFIGTEQL 
DGIELSDDMQ VKWLSAEQSN SSLIIGDMAM IKLIRHIHQG IHPEVEMTRH LTRLGYANTA 
PLLGEVVRVS PEDERSTLII IQGAIRNQGD AWTWMLDTLR QTLEQSMVAG QDDDAEQERF 
NPLFNQAAVI GKRLGELHVA LAKPTDDPAF APVAMSDEDV SVWARSVMAR VADCLDRVSE 
IGHGSDSDGL DTETIRVSTM LADRREQILS AVGTLASVAK DTLMIRNHGD FHLGQILVAE 
DDVYIIDFEG EPARPLAERR AKTNPLRDVA GLIRSLSYLA ASADTGREIV VQGDSAARAA 
LIEAFRKKAE THFLDSYFTA VDGEPSLAMD PEKRREILDL FLLEKAAYEI GYEASNRPGW 
IAIPLAGFAD IAERLTENSL