Gene Avi_5554 details

Gene Information

• Locus tag: Avi_5554
• Symbol: mcpA
• ID: 7381462
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 552490
• End bp: 554451
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643649134
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002547371
• Protein GI: 222106580
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0672502
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAACC TGCCAATCAT TGGTAAATTC TTAACTATAA TGGCGCTGTT CGGTGTGTTT 
GCACTGGGCG TTGCTGGCTA TGCTGGAACG CGCATTATGG ATATCGACAC ATCCTATAGC 
GACCTCATAT CCCAGGATAC TGCCGCTGCG ACAGCGATAT CGCGCGCCAA CCGGGCCTTG 
CAGGGTGCAC GCTCGGCAAT TGCGGAACTG ACGATTGCTC GCTCCGACAA AGAGAAAGCC 
GGTTCTCAAC AGGACCTTCA ATCCTCGCGG GCCGCTTTCG TAAAATTCAT GGACATTGCC 
ATTGCCGCGG TTCCGCAGCG CCGTGATGTT GCCGATGCCA AGACGGAAAG TCTGCGCATC 
ATCGACAATA CCTGTGCCAA TACCATTGCT CTTGGCAATG CCAGCAATTC GCCAGAGGGC 
GTGGCGCTCG CGCAAGCCGC CTTTATCAAT GAGTGTCAGG CGGCGTTTCG CGTTATTACG 
CCAAAAAACG TGCAATTGGT GGATGATTTG AACAATGCCA CCGATCAGAA AAGTGATGCA 
TTATCCGTGA CCTCAAGCCA TGCCGCTATG GTCACGGTGG CCAGCATCGT AGCCGGTCTG 
GCAATCGTCC TGACCATAGG CTTCTTCGCA ATCCGCTCGT GGCTTGTCCT GCCGATCCGC 
AAGGTTGCCG CAACGATGGA AACTCTGGCC GGTGGCGATC TCTCTGTGGA TGTTGCGGGA 
ACCGAACGTC GTGACGAAGT CGGCGGGATG GCCAAGGCCG TGCAAGTGTT CAAAGATAAC 
GGCCTGCGTG CCCGGGAACT GGAACGGGAA GCAGAAAGCG TGCGCAATTC CAGCGAGGCG 
GAACGGGCTC GTGTTGCAGA AATGGACCGC AAGCGCGCGG AAGAAATGGC AGAGGCGACG 
TCTGGTCTGG CCGATGGCCT GAAGCGACTG TCGAATGGCG ATCTCGGCTT CCGTTTGAGC 
CAGCCGTTCG CCACCGAGTT CGAAGCGCTT CGCAATGACT TCAATGCTGC CGTTGCACAA 
TTGTCCGATA CGCTGGGTGC GGTTGCTAAT GCCACCAGCT CTATCGATAG CGGTTCACGG 
GAAATCAGCC AGGCTGCCGA AGACCTGTCG AAGCGCACCG AACAGCAGGC TGCATCGCTG 
GAAGAAACCG CCGCCGCCCT CGACCAGATC ACCACCAATG TCGCCAATTC CTCCAAGCGC 
GCCGAAGAAG CCCGGCATGT GGCGATCGAG GCCAACCAGT CAGCCCGCGA ATCCGGGATT 
GTCGTCTCCA ACGCTGTCGA TGCCATGCAG CGGATCGAGC AATCGTCCAA CCAGATCTCC 
AACATCATTG GCGTCATCGA CGAAATTGCT TTCCAGACCA ATCTTCTCGC TTTGAATGCG 
GGCGTGGAAG CAGCGCGCGC CGGGGAGGCT GGTAAGGGCT TTGCGGTCGT GGCCCAGGAA 
GTGCGCGAAC TTGCCCAGCG CTCTGCCGGT GCCGCCAAGG AAATCAAAGA GTTGATCCGC 
AATTCTGCCG GCGAAGTCAG CAATGGTGTG ACGCTGGTGC GGGCGACCGG TGAGGCACTC 
AAGGCCATCG AAGCGCATGT CGTTACCATC AACAGCCAGC TTGATGCCAT TGCCCTGTCG 
TCACGCGAAC AATCGGTTGG TCTTGCCGAA GTCAACACCG CCGTCAACCA GATGGACCAG 
GTGACCCAGC AGAATGCCGC CATGGTCGAG CAATCGACGG CAGCCAGCTC TTCGCTGGCA 
TCGGAAGCGG GCCGGTTGCG TCAATTGATT TCGCAATTCC ACCTCGACGG CACCCAGACC 
ATGCCTGCCT CTTCGGCTGC TGGCTGGACA TCCAAAAAGC CGGCTGCTGC GCATGAACAG 
CACCGTCCGG TTGCGTCTCC GGCCCGGCGG ATGGTGGGGC AGGTGGCCCG CGCCATGGGT 
CTCCAGACAG CGGCCAAGGC CGATAACTGG GAGGAATTTT GA 

 

Protein sequence

MKNLPIIGKF LTIMALFGVF ALGVAGYAGT RIMDIDTSYS DLISQDTAAA TAISRANRAL 
QGARSAIAEL TIARSDKEKA GSQQDLQSSR AAFVKFMDIA IAAVPQRRDV ADAKTESLRI 
IDNTCANTIA LGNASNSPEG VALAQAAFIN ECQAAFRVIT PKNVQLVDDL NNATDQKSDA 
LSVTSSHAAM VTVASIVAGL AIVLTIGFFA IRSWLVLPIR KVAATMETLA GGDLSVDVAG 
TERRDEVGGM AKAVQVFKDN GLRARELERE AESVRNSSEA ERARVAEMDR KRAEEMAEAT 
SGLADGLKRL SNGDLGFRLS QPFATEFEAL RNDFNAAVAQ LSDTLGAVAN ATSSIDSGSR 
EISQAAEDLS KRTEQQAASL EETAAALDQI TTNVANSSKR AEEARHVAIE ANQSARESGI 
VVSNAVDAMQ RIEQSSNQIS NIIGVIDEIA FQTNLLALNA GVEAARAGEA GKGFAVVAQE 
VRELAQRSAG AAKEIKELIR NSAGEVSNGV TLVRATGEAL KAIEAHVVTI NSQLDAIALS 
SREQSVGLAE VNTAVNQMDQ VTQQNAAMVE QSTAASSSLA SEAGRLRQLI SQFHLDGTQT 
MPASSAAGWT SKKPAAAHEQ HRPVASPARR MVGQVARAMG LQTAAKADNW EEF