Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5513 |
Symbol | |
ID | 7381429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 508315 |
End bp | 510060 |
Gene Length | 1746 bp |
Protein Length | 581 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643649101 |
Product | hypothetical protein |
Protein accession | YP_002547338 |
Protein GI | 222106547 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3408] Glycogen debranching enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAAG CCAAGGCGAA TGCACGACCA GACGGACTTG TCGAAAGCGA ATTGCCCCTG CAATTGGCGT TCATGGCACC CCGCCTGCAA GGTGATTTTC TGCCGGAAGG ACGGCTTGAA CTGTCACTCT GGGGTTGCGG CCGGATCGCA AACATCGCCC TTCACCCTTG GACCGGCCCG TTCGTCTACG CGCCGAACCA GATGACCGGC AAAGACCATG GCCTCTATGT TGCCCAATCC GCCCCGGTTC TGGTGCTGAC CGGCAGCCGG TTGAAATCCA CACGCCCAGC CCGCCGCTGC GCCTGGTGGG GCACGCTGAC CAAGCCGGAA AAAGTGGCGC GTAGCGGGGC AAGGCGGATC ATCCGCACGC CATGGGGTGT GGCCATCGTT GAAGACAAAG GCGACGGCGT GATCGTCATT GCCGCAGGGG CCAGCGACGC GGAAGCCGAA CGGGGCATGG CCCTACCCGT TGAGACGATC ATCGCCGAGA GCAAAGCGCA TGTGACGCGC TGCGACCTGC TGCCACAAGC CCCACCGCTG ATGCGCAGCA TGGCAATCCA GAGCGCCCAT GCTTCGCTCT CCAGCATTCG CCGTGCCGAA GACGGTTCCT TTCTGGGGCT TGCCGCAGGC CAGGCCTATA GCGCCCCGAC CCGCACCTAT TACCGCGACG GCTACTGGAC CTTGCAGGCC CTGCTGCATC TCGAACCGAA GGCCGTCCGT GGCCAGATCG ACCTGCTGGC AACCGGTATC CAGCCCGATG GCGAAAGCCC GAGCGGCGTC ATTCTGACCG GTCCGAAACA GGGCGAGGAG TGGGAGAAAT TCCGCACGAC GTCTGATGAC TACAAGATGG AACATCTGCG GCGCACCGAT TGGTGGAGCG ATCATTTCGA CAGTCCGCTG TTCTTCATCC TGACGATTGG CGATTATATC CGCACCACCG GCGACACAAC CGTCCTTACC CGTCACTGGA AGACCATCGA AGCGATTTTC CGTCGCTATC AAGGCTTCGA CACTGCCGGA AACGGCTTGC CTATCAAGCC ACGGCACGAC CGTGACTGGG CCGACAATGT CTATCGCCAT GGCTATGTCG CCTATGATCT CGGGCTTTGG ATCGGCGCGC TTGACGCGAT TGCTGAATTC GGCATTCATC AGGACGAGGC TTTGGCCAAG GAGGCAAAGC AAACGGCTAT CACCGCACGC GCATCGCTGG ACGAAGCGCT TCTCACACCC CATGGCTGGT ATGCCGATTA CGGCCTGAAA AGTGATTTCG TAGAGGATCA TCTGACACTC GATAGCCTGA CTCTCCTGCG GTTCGATGCC GTGTCGGATC AACGCGCCAA AACCGTGCTT GGCCATGTCG CGGCCCTGCT TGAGACTCGC AACAATCCGC GCCAGCCCTA TGGCGACTGG GGTGTGATGT GCGCCTGGCC GCCCTTCAAG CGACCCGCCG ATACCCGCGC CAAATCCGCC TTTGCCTATC GCTATCACAA CGGCTCCGAC TGGCCCTATC TCTCAGGTCT CTATGCCGAA CAGCGATTGA AATACGGCAT GGACGGCTGG GACTATCCAA TGCTGCGCTG GTGGCAGACC AGCCTTGAAA ACGGCTGGAT CGGCTCAGTC GAATATTTCT CACCGCCTTT TGGCCGAGGC TCGCTGCTCC AGGGCTGGAC AGGCATGCAC GCCGCCGCCA TCCTGCAATA CAGACCGCAG GTTGAAGCGG CGATTACCAC TGGCCGCATC GCCTAA
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Protein sequence | MDKAKANARP DGLVESELPL QLAFMAPRLQ GDFLPEGRLE LSLWGCGRIA NIALHPWTGP FVYAPNQMTG KDHGLYVAQS APVLVLTGSR LKSTRPARRC AWWGTLTKPE KVARSGARRI IRTPWGVAIV EDKGDGVIVI AAGASDAEAE RGMALPVETI IAESKAHVTR CDLLPQAPPL MRSMAIQSAH ASLSSIRRAE DGSFLGLAAG QAYSAPTRTY YRDGYWTLQA LLHLEPKAVR GQIDLLATGI QPDGESPSGV ILTGPKQGEE WEKFRTTSDD YKMEHLRRTD WWSDHFDSPL FFILTIGDYI RTTGDTTVLT RHWKTIEAIF RRYQGFDTAG NGLPIKPRHD RDWADNVYRH GYVAYDLGLW IGALDAIAEF GIHQDEALAK EAKQTAITAR ASLDEALLTP HGWYADYGLK SDFVEDHLTL DSLTLLRFDA VSDQRAKTVL GHVAALLETR NNPRQPYGDW GVMCAWPPFK RPADTRAKSA FAYRYHNGSD WPYLSGLYAE QRLKYGMDGW DYPMLRWWQT SLENGWIGSV EYFSPPFGRG SLLQGWTGMH AAAILQYRPQ VEAAITTGRI A
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