Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5511 |
Symbol | ugpC |
ID | 7381427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 505709 |
End bp | 506806 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643649099 |
Product | ABC transporter nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate) |
Protein accession | YP_002547336 |
Protein GI | 222106545 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.52689 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGTCGCGC CAGCCCCCTT ATCGACGCAG GCTGCCCAGC CCAAACAGGG GGCAAAGCTT GAGCTTGTCG CCCTTCGCCG CGCTTTCGGC GCCTATAAAG CGCTTGACGG TATTGATCTC GCCATCGAAC CGGGCGAATT CATCGCGCTG CTCGGCCCTT CCGGTTGCGG AAAATCCACG GCGCTGAACT GTATCGCCGG GCTTTTACCG CTGACGGGTG GCGAAATCCG GGTCGGCGGC CAGCGCATCG ACCAGCTGGA GCCGGAAAAG CGCGGCTTCG GCATGGTCTT CCAGAGCTAT GCGCTGTTTC CTCATATGAC CGTGCGGCGC AATGTTGGCT TCGGCCTGTC CATGCAAGGC ATCAAAGGCA CGGAAGCCGA CCGTCGCATC GAAGCAGCCC TCGATCTGGT ACGGCTCGGT TCGCAGGCGG ATAAATTGCC GGGGCAACTC TCTGGCGGCC AGCAGCAGCG GGTCGCCATT GCCCGTGCCA TCGTCATCCG CCCGCCAGTC GTGCTGATGG ATGAGCCACT TTCCAACCTG GATGCCAAGC TGCGGCTGGA AATGCGCGCC GATATCCGCG CCATTCACGA CCAGATCGGC TCGACAACCA TATACGTCAC CCACGATCAG GATGAGGCAC TGTCGATGGC CGACCGGATC GTAGTGATGA GCCAGGGCCA TATCCGCCAG ATCGGCACGC CTGAAGATCT CTACATGCGC CCGAACCATG TCGATGTCGC CGATTTCATG GGCTTTCGCA CCCGGATTGC CGGGCGTATC ACAGCCGTAT CCGGCGATGA GTCCCAGATC GAAGCCGCGG GCGCAACCAC TGTCGGCACG CCCCGCCAAC CGGTGCAGGT CGGCGATGCA GCTGTGCTCA GCGTTAGACC GGAGGATATG ATCGCCGTTC AGGATGGCAG CGGCATTCCG GTGACAATCA AATCCATGGA ATATCGCGGT AGAGCCTATT TTGGCGCGGC AGAAGCCAGT GACGGGGCAG AGGTGCATTT TCGCTCGGAT ATCTTGCTGC CACGCGGCAC CGTCACCAGC GTGCGTCCGG CAGAAGGCCG TGCGCTGATC TTTAAGGGTG ATGCATGA
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Protein sequence | MVAPAPLSTQ AAQPKQGAKL ELVALRRAFG AYKALDGIDL AIEPGEFIAL LGPSGCGKST ALNCIAGLLP LTGGEIRVGG QRIDQLEPEK RGFGMVFQSY ALFPHMTVRR NVGFGLSMQG IKGTEADRRI EAALDLVRLG SQADKLPGQL SGGQQQRVAI ARAIVIRPPV VLMDEPLSNL DAKLRLEMRA DIRAIHDQIG STTIYVTHDQ DEALSMADRI VVMSQGHIRQ IGTPEDLYMR PNHVDVADFM GFRTRIAGRI TAVSGDESQI EAAGATTVGT PRQPVQVGDA AVLSVRPEDM IAVQDGSGIP VTIKSMEYRG RAYFGAAEAS DGAEVHFRSD ILLPRGTVTS VRPAEGRALI FKGDA
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