Gene Avi_5471 details

Gene Information

• Locus tag: Avi_5471
• Symbol: ssuA
• ID: 7381561
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 470916
• End bp: 471881
• Gene Length: 966 bp
• Protein Length: 321 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643649068
• Product: ABC transporter substrate binding protein (aliphatic sulfonate)
• Protein accession: YP_002547305
• Protein GI: 222106514
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
• TIGRFAM ID: [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCAACC GCAGACAGAC CCTTGGCTTG CTTGGCGCTG CCAGCACCAT CCTCGCCTTG 
CCGGCAATCC GTACCGCCCA GGCGGCAACC ACGACATTGC GGATCGGCTG GCAGAAGAAT 
GGTGTGCTGG CGCTGGCCAA GCGCACGGGC GCGCTGGAAA AGCGTTTGGC TACACGCGGC 
GTCACCGTGA CCTGGGCTGA ATTTACCTCA GGCCCGCCGC TTCTGGAAGC GCTGGGCGCC 
GGTGCGCTCG ACTTCGGTCC GACAGGCGAT GTGCCGCCAC TGTTTGCCCA GGCGGCGGGC 
GGCAATCTCC TTTATGTCGG CACGTACAAG GGAGCACCCT CCGGCACGGC ATTGCTTGTT 
CACAAGGATT CACCGATCCA GTCGATTGCC GATCTCAAGG GCAAGAAGCT TGCCTTCAAG 
CGTGGTTCGA GCGCCCACAA TTTCGTGGTC AAGGCGCTGA AAACGGCCGG ATTGACGCGA 
TCAGATGTCA AGGCTGCGGA TCTGTCGCCT GCCGATGCGG GGGCGGCATT CAAATCCGGA 
AATGTCGATG CCTGGGCAAT CTGGGACCCT TATTTTGCGG TGGCCGAGAC CGATCCTAAT 
GCCAGGGTGT TGACGACCGC CAGCGGTATT GTCGATAGCT GGAGCTTCTA TTTCGGCAAT 
GGTGATTTCA CCAGTAAAAA CCCGGAGGTG ATCACCGATG TGATCGATGA ATTGCGCAAG 
ACCGGCGTTT GGGCGCAGAG CCATCTGGAT GAGACGATTA CAGCGCTCGC CGAAATCACT 
GGCGTGCCGC GCGACACGAC AAAGACCGTG CTGACCCGGC CCGGCGCCGA TCTCGGCAGC 
GTGTCTACCC TGAACGATGA AGCCATCGCC TATCAGCAGG CCTTGGCCGA CGAGTTTCAC 
GCCCTGCAAA TTCTGCCGAA GCCTTTGAAG ATCGCCGAGA TCGTCTGGCG CCCGAAGGCC 
AGCTGA 

 

Protein sequence

MINRRQTLGL LGAASTILAL PAIRTAQAAT TTLRIGWQKN GVLALAKRTG ALEKRLATRG 
VTVTWAEFTS GPPLLEALGA GALDFGPTGD VPPLFAQAAG GNLLYVGTYK GAPSGTALLV 
HKDSPIQSIA DLKGKKLAFK RGSSAHNFVV KALKTAGLTR SDVKAADLSP ADAGAAFKSG 
NVDAWAIWDP YFAVAETDPN ARVLTTASGI VDSWSFYFGN GDFTSKNPEV ITDVIDELRK 
TGVWAQSHLD ETITALAEIT GVPRDTTKTV LTRPGADLGS VSTLNDEAIA YQQALADEFH 
ALQILPKPLK IAEIVWRPKA S