| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5461 |
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| Symbol | treZ |
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| ID | 7381553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 459765 |
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| End bp | 461528 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649060 |
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| Product | malto-oligosyltrehalose trehalohydrolase |
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| Protein accession | YP_002547297 |
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| Protein GI | 222106506 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGACA TGACATTTGG CCCGGTTCTT TACGGCAACG GCACGATCTT CAGCCTTTGG
GCGCCGCTTC AGGAAAAGGT TCTGCTGAAG ATCGAGGGAC AGGAGCCTCG TCCCATGACA
GCCGGTGACA ATGGGTGGTA CAGCGCCGAA GTGCCTGAGG TCGGGGCCGG ATGCCGTTAT
AACTTCATCC TGGAGGATGG CCTCGCTGTT CCAGATCCCG CCTCACGCTT CCAGCCCGAC
GATGTGCATG GGCCAAGCGA GGTTATCGAC CCAGCCTATG CCTGGCAGCA GACCGAATGG
CAGGGACTGC CCTGGGAAGA GATCGTCATC TACGAACTGC ACGTGGGAAG CTTTACGCCC
GCCGGAACGT TTACAGCCAT CATCGAACGG CTGGACCACC TGAAAAACCT CGGCGTGACC
GCGCTGCAAC TCATGCCAAT CAGCGACTTT CCAGGACGCT GGAACTGGGG CTATGACGGC
GTATTGCCTT ATGCACCCGA TAGCAGCTAC GGCCGTCCTG AGGATCTGAA GCGGCTGGTG
GACGAAGCCC ATGCACGCGG CATCTGCATC TTTCTCGATG TGGTCTATAA TCACTTCGGT
CCGGACGGAA ATTATCTTCC CGCCTATGCG CCGATCTTTA CCGACAAGCA CATCACGCCC
TGGGGGCCGG GTGTCAATTA CGATGGCGAC CAGTCGGAAG CCGTGCGTGA ATTCGTCGTG
CGCAATGCCA TATACTGGGT GGACGAGTTT CGGATCGACG GACTGCGCTT CGACGCCGTT
CACGCCATAG AAGACGAGCG CAAGCCCCAT ATCCTTCATG ATATCGCCAT GCGGACACGC
GCTTGCGCAC TCGGACGGGC CGTGCATCTG ATCGTCGAGA ATGAAGACAA CAATGCCGAC
CTGCTCGAAC GTAATAAAAA TGGTGCGCCC ATCCATTTCA CCGCGCAGTG GAATGACGAC
ATTCACCATG TCCTGCACAT CACGGCCACC GGTGAAAATT TTGGCTATTA TCAGGATTAC
GCAAACGACA TGTCTAAGCT CGGTCGGGCG CTGGCAGAGG GCTTTGTCTA CCAAGGCGAG
CACATGCCCT ATAGCGGGAA GGAAAGGGGC ATGCCGAGCA CCCACCTGCC ACCGACTGCA
TTCATTTCCT TTATCCAGAA CCATGACCAG ATCGGCAATC GCGCCTTGGG CGACAGGATG
GCCGCATCGC AACCATCAGA GGCGTTGAAG GCACTGGCGG CGGTTTATCT GCTGGCCCCG
CAGATCCCCA TGCTGTTCAT GGGAGAGGAA TGGGGCGCAA AGACCCCCTT TCCGTTTTTC
TGCGATTTCA ACGAAGAGCT GAATGAAGCG GTAAGACAGG GACGGCGCAA GGAATTGTCA
AGGTTGCCCG GCTTCGATGC CGATGATGCA TCCGATCCAA CAGCACAGAC AACATTCAGT
GGCGCCAAAC TATCATGGGA GCCAGACCAG CAAGACGGTG AAATTCTGCA ATTTTACCGC
GAATTGCTGG CGCTGCGTAA AGAGAAAATC GTTCCTCTGC TGCAAGATGC CCACGGGCAT
GCGGGCAACT ATAGCAGCCT GGGGTCAGTG ACAATTGTGC GCTGGACGCT CGGTTCACAC
AATCTGACCC TCACCGCCAA TCTGACTGCC GAGACTGTGG AGAACCCAAT ATATACCAAC
GGCGAATGCC TGTTCACGTT CGGCACACAG CCAGGAAACA ATCTCGGTCC CTGGGCCGTT
GTCTGGCGCA TTGAACCTTG CTGA
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| Protein sequence | MQDMTFGPVL YGNGTIFSLW APLQEKVLLK IEGQEPRPMT AGDNGWYSAE VPEVGAGCRY
NFILEDGLAV PDPASRFQPD DVHGPSEVID PAYAWQQTEW QGLPWEEIVI YELHVGSFTP
AGTFTAIIER LDHLKNLGVT ALQLMPISDF PGRWNWGYDG VLPYAPDSSY GRPEDLKRLV
DEAHARGICI FLDVVYNHFG PDGNYLPAYA PIFTDKHITP WGPGVNYDGD QSEAVREFVV
RNAIYWVDEF RIDGLRFDAV HAIEDERKPH ILHDIAMRTR ACALGRAVHL IVENEDNNAD
LLERNKNGAP IHFTAQWNDD IHHVLHITAT GENFGYYQDY ANDMSKLGRA LAEGFVYQGE
HMPYSGKERG MPSTHLPPTA FISFIQNHDQ IGNRALGDRM AASQPSEALK ALAAVYLLAP
QIPMLFMGEE WGAKTPFPFF CDFNEELNEA VRQGRRKELS RLPGFDADDA SDPTAQTTFS
GAKLSWEPDQ QDGEILQFYR ELLALRKEKI VPLLQDAHGH AGNYSSLGSV TIVRWTLGSH
NLTLTANLTA ETVENPIYTN GECLFTFGTQ PGNNLGPWAV VWRIEPC
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