Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5412 |
Symbol | |
ID | 7381512 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 413162 |
End bp | 414352 |
Gene Length | 1191 bp |
Protein Length | 396 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643649020 |
Product | transcriptional regulator ROK family |
Protein accession | YP_002547257 |
Protein GI | 222106466 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1940] Transcriptional regulator/sugar kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.125738 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTCT GGACGAGCAC ACCGCCGATG TTACGCCAGA TCTCCGTTCG CGCCGCTATG GACATCCTTC TGCACCAAGG CCCGACCTCG CGGGCGGATC TGGCAAAAAA GACTGGCCTA TCGAAACAGA CCATGTCCGA GGTCATACGC ACGCTTGAGA CGGCAGGCTG GGTTCGAGTC AAGGGAATCG TGTCCGGCAA GGTCGGGCGC AGTGCCGTGA CCTATGAAGT CGCCCCGGAT GCGGGTTTTG TCATCGGTAT GGATATCGGT GCAACGACCA TTCGGGTGGC GATTGCCGAT ATTGCCGGAA CGATTGTCCA TGAAGTCGAA AAGTCGGCCG GAGAGCATGG TGGGGAGGCC CTTCTGGCGC ATGTCAGCGG CGTTGTCGAA GCGTCGCTTA AAAAGGCGAG GGTTTCCCGC AGCAAGGTTC TGTTGGCCGC TGTGGCCATG CCTGGCGTCA TCGATCCTGA AACCGGTCGG CTTTCGCTTG CGCCGAACCT GTCAGAAATT GGCAGTCTCG ATGTGATCAA GGCCTTGCAG GGCATTTTCC GCTGCGATGT CATCATCGAA AACGATGTCA ATGCGGCGGT GATTGGCGAA AGCTGGAAAG GCAGCGGCAT CGGTCTCGAT TCGGTTGCGT TCGTGTCGCT GGGAACCGGT ATTGGCCTTG GCGTCCTTTT CAACGGCAAG TTGATGCGCG GGGCTAAAGG AGCGGCAGGC GAAATCGGCT ATCTGCCGTT CGGAGCCGAT CCCTACAACT CGGAAAGTCT GGAGCGCGGC GCGCTCGAAT GCGCCATTGG CGCCCGTGGC ATTCTGGAGC GCTATGGCAA CCCTGGAGAC GGCGGTATGA CGGTTCGCGA TATTCTTGAA GCGGCTGAAA AGGGCGACGC AAAGGCGCTG GCAACCGTGC AGGAAACAGC GCGGCTGGCG GCTTTGCTGG TGGTTTCGGT TCACGCCATG CTCGATCCGG GTAAGATCAT TCTCGGTGGC AATGTCGGTC GCAATCCGTT GATGGTGCGC ATGGTCAAGG AGGCGCTGGC AACCTCGACT CGCAGCAGCA TTTCGCTTGA GGCGAGCACG CTTGCGTCCC GCGCCACCTT GGTTGGCGCG GTGGCCATCG CGCTCAACCA GCTTCACAAT GCGCTGTTTT CCCCCCAGGA TCTTCCAAGC GAAATGCGTC TGCCAGCCTG A
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Protein sequence | MNLWTSTPPM LRQISVRAAM DILLHQGPTS RADLAKKTGL SKQTMSEVIR TLETAGWVRV KGIVSGKVGR SAVTYEVAPD AGFVIGMDIG ATTIRVAIAD IAGTIVHEVE KSAGEHGGEA LLAHVSGVVE ASLKKARVSR SKVLLAAVAM PGVIDPETGR LSLAPNLSEI GSLDVIKALQ GIFRCDVIIE NDVNAAVIGE SWKGSGIGLD SVAFVSLGTG IGLGVLFNGK LMRGAKGAAG EIGYLPFGAD PYNSESLERG ALECAIGARG ILERYGNPGD GGMTVRDILE AAEKGDAKAL ATVQETARLA ALLVVSVHAM LDPGKIILGG NVGRNPLMVR MVKEALATST RSSISLEAST LASRATLVGA VAIALNQLHN ALFSPQDLPS EMRLPA
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