| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5331 |
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| Symbol | |
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| ID | 7380692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 333017 |
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| End bp | 334312 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643648954 |
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| Product | ABC transporter substrate binding protein (sugar) |
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| Protein accession | YP_002547191 |
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| Protein GI | 222106400 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.998389 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATCA ACCGACGCAC CGTGGTGAGC GGTCTGGCTT TGGGCCTCGC TGCTGCCGGG
CTTTCCACGC CCGTGCTGGC TGCCGACGAA GTCACGCTCA ACGTGCTTTA CAATCTGCCG
GGCTTCACGA AATTCCATCA GCCGCTGGCC GATGCGTTCA TGAAGAACAA TCCGAATGTA
AAGATCAATT TTCTGGCGCC CGCTCCAGGC TATAACGAGG GTCAGCAGCA GGTCCTGCGC
GCTGCCGTGA CCGGCAATCT GCCGGATGTT TATTTCTCAG GCTTCAACCT GACCGCGGAG
CTGGTTCACA CACTGGCACC CCGCAACCAG ATCACCGATC TGGCGCCCTT CATCGCGGCG
GAAGGCGGCC AGGCCTTCCT CGACAAAAAT TACAACCCGA AAATGGCGGC CCTCGGCCAG
ATCGATGGCA AGCAATACGG CCTCCCCGTC AATGCCTCCT CGCCAATCAT CTATATCAAT
GCTGATCTGG TAAAGAAGGC TGGCGGCGAT CCGGACAATA TGCCGAAAAC CTTTCCCGGA
CTGATCTCGC TGGCCAAGAA TATCCACGCG CTCGATCCGA AAATCTCCGG CATGGGTTAC
GACATCAATG GTTGGCCGGA TGACTGGCTT TGGCAGGCAT TGGTTCTCGA GCAGGGCGGC
ACATTGGTCA ACGAAAAGAC CAAGACTGTG GCTTTTGACA ACGAGATTGG CCTCAATGCT
CTGAAAATGG TTCGCCAGTT CGTGACCGAG GGTGGTCAGA CCCTGCTCGA CTGGGACCAG
TCCCGTCAGC AATTTGGTGC TGGTCTCACT GGTTTCATAT TCTCGACACC GGCCCATGTT
CAGACGATCG AGGGACTGGT GGGCGACCGT TTCAAGCTGA AGACGGCAAC CTTCCCGCTG
GACAACCCGG AAAAGGGTGG CGTACCGACG GGCGGCAACT CAGCCGTGAT CCTGACGCAG
GACAAGGCCA AGCAGGACGC CGCCTGGAAA TATCTGAAAT GGATCACCGG GCCTGAGGCG
CAGAACACCA TCGTGCGGAT CACCGGCTAT CTGCCGACCA ACAAGCTTGC CACCGGTGCC
GACTATCTTG CGCCTTATTA TGCCGAGCAT CCGAATGTAA AGACCGCCTC GCTCCAGGCA
GACCGGTCCT TGCCTTGGGC CGGTTACCCA GGCGGCGATT CCGTTCGCGT CTGGCGCACC
CAGCGCGACA TTATCGGCAC GGTCATGCGC GGTGAAGTGA CGCCGGAGGT TGGCCTGAAG
CAGATGGTCG ACCAGACCAA CGCCTTGTTG AAATAG
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| Protein sequence | MKINRRTVVS GLALGLAAAG LSTPVLAADE VTLNVLYNLP GFTKFHQPLA DAFMKNNPNV
KINFLAPAPG YNEGQQQVLR AAVTGNLPDV YFSGFNLTAE LVHTLAPRNQ ITDLAPFIAA
EGGQAFLDKN YNPKMAALGQ IDGKQYGLPV NASSPIIYIN ADLVKKAGGD PDNMPKTFPG
LISLAKNIHA LDPKISGMGY DINGWPDDWL WQALVLEQGG TLVNEKTKTV AFDNEIGLNA
LKMVRQFVTE GGQTLLDWDQ SRQQFGAGLT GFIFSTPAHV QTIEGLVGDR FKLKTATFPL
DNPEKGGVPT GGNSAVILTQ DKAKQDAAWK YLKWITGPEA QNTIVRITGY LPTNKLATGA
DYLAPYYAEH PNVKTASLQA DRSLPWAGYP GGDSVRVWRT QRDIIGTVMR GEVTPEVGLK
QMVDQTNALL K
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